PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00047976-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 34617.2 Da PI: 6.7507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l + ++ +G g+W+++++ g++R++k+c+ rw +yl PSME_00047976-RA 14 RGPWTQDEDLRLTEFIRAHGEGCWSAVPKQAGLKRCGKSCRFRWVNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PSME_00047976-RA 67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 110 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.402 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.24E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.428 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.60E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNLPCYDSND GLNRGPWTQD EDLRLTEFIR AHGEGCWSAV PKQAGLKRCG KSCRFRWVNY 60 LRPSVKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEVKNYWNT RLNKKGHARG 120 CIRLKSIKPR KPNISEPAVS LKTPTSANQE DEKEKVICCP VIEDLKNGAT SSNYPRKQEA 180 SSFSDPGKLA AVSGEMDLWN SFQLNLNSVP PWACCTFLHD DFKSDFVPEL LDYNQENVHP 240 LSCRFDTENV ISKDYVDEQI MYSIFPCSTL PSPQLVVNCD GFTVVPHMND FEEIFNPFPM 300 PYGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 9 | 115 | 22 | 127 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-53 | myb domain protein 5 |