PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047976-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 304aa    MW: 34617.2 Da    PI: 6.7507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047976-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT++Ed++l + ++ +G g+W+++++  g++R++k+c+ rw +yl
  PSME_00047976-RA 14 RGPWTQDEDLRLTEFIRAHGEGCWSAVPKQAGLKRCGKSCRFRWVNYL 61
                      89********************************************97 PP

2Myb_DNA-binding52.51.1e-1667110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PSME_00047976-RA  67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 110
                       7899******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.402961IPR017930Myb domain
SuperFamilySSF466892.17E-2812108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211568IPR009057Homeodomain-like
CDDcd001676.24E-101661No hitNo description
PROSITE profilePS5129424.42862116IPR017930Myb domain
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2469115IPR009057Homeodomain-like
CDDcd001675.60E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNLPCYDSND GLNRGPWTQD EDLRLTEFIR AHGEGCWSAV PKQAGLKRCG KSCRFRWVNY  60
LRPSVKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEVKNYWNT RLNKKGHARG  120
CIRLKSIKPR KPNISEPAVS LKTPTSANQE DEKEKVICCP VIEDLKNGAT SSNYPRKQEA  180
SSFSDPGKLA AVSGEMDLWN SFQLNLNSVP PWACCTFLHD DFKSDFVPEL LDYNQENVHP  240
LSCRFDTENV ISKDYVDEQI MYSIFPCSTL PSPQLVVNCD GFTVVPHMND FEEIFNPFPM  300
PYGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27911522127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-53myb domain protein 5