PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047944-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 338aa    MW: 38047.4 Da    PI: 4.7933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047944-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-164388146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +g+WT+eEde+l ++++++G g+W+  a+  g++Rt+ +c++rw +
  PSME_00047944-RA 43 KGPWTPEEDEQLMEYIRLHGEGRWSFLAKSAGLKRTGRSCRLRWSN 88
                      79******************************************87 PP
2Myb_DNA-binding43.95.6e-1496139146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + T+eE+ l+++++ ++G++ W+ Iar ++ gRt++++k++ ++
  PSME_00047944-RA  96 RSKITPEEERLIIELHGRWGNR-WSHIARSLP-GRTDNEIKNYCRT 139
                       6788******************.*********.**********886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6633894IPR017930Myb domain
SuperFamilySSF466895.5E-2941136IPR009057Homeodomain-like
SMARTSM007172.5E-144292IPR001005SANT/Myb domain
PfamPF002495.7E-154388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234497IPR009057Homeodomain-like
CDDcd001674.63E-114590No hitNo description
PROSITE profilePS5129416.56795145IPR017930Myb domain
SMARTSM007173.6E-1395143IPR001005SANT/Myb domain
PfamPF002492.7E-1297139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2098145IPR009057Homeodomain-like
CDDcd001672.64E-10100139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MWQSSKSKYE EQALDRSLST LAFGTLSRSA SGVEDEDEAE TRKGPWTPEE DEQLMEYIRL  60
HGEGRWSFLA KSAGLKRTGR SCRLRWSNSL RPDLKRSKIT PEEERLIIEL HGRWGNRWSH  120
IARSLPGRTD NEIKNYCRTR MKGKLNLQVE SGGGGDGGMD VDDRVDFERS TGPYCPPTSF  180
QRSPDHDSAQ PSTSFLTQNT KEVAVQTNKT PNVQYDISAQ IIPNDEANHD ERELQGESQH  240
GPSQITDDGQ PGAASHQDLE HSENQVFENS LPYNFLVGSP ASLLYSSDFC ADGATQDGRT  300
PEAFSDREAY LSRYSDVLWH MDEEDDCFNG SKRSSVSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-274014524128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.18e-51myb domain protein 79