PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047601-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 162aa    MW: 18009 Da    PI: 9.9442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047601-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.7e-1283127145
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       +ke kr +r+ +NR++A+  R+RKka++ eLe+k+keL++ N++L
  PSME_00047601-RA  83 DKEHKRLKRLLRNRVSAQQARERKKAYLNELETKAKELQQRNSEL 127
                       5899**************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-1583147IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1184145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.34685148IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-1387145No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-1687147No hitNo description
CDDcd147042.39E-1888138No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQATAPDVSG SASLDKFITS SSGDPNEARN ESVNESDDDI RRVPEMGGQT ALVVNSDLGV  60
KTESEQASVA GSSQRKRGRT PADKEHKRLK RLLRNRVSAQ QARERKKAYL NELETKAKEL  120
QQRNSELEER VSTFQNENFM LRQILKNMTA KNKAGGFGEI EG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0867601e-149EF086760.1 Picea sitchensis clone WS02917_P14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668083.11e-48transcription factor HY5
SwissprotQ9SM501e-44HY5_SOLLC; Transcription factor HY5
TrEMBLA9NZF51e-92A9NZF5_PICSI; Uncharacterized protein
STRINGXP_004291469.12e-47(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-45bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]