PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047211-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 670aa    MW: 74252.4 Da    PI: 7.9058
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047211-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.22.9e-382023922137
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk++eWL++ a  ai+el+ +                             
  PSME_00047211-RA 202 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAVEWLIKSAADAIDELPVLnthdlqsaitnaspslhphppsnsnpgdn 294
                       689*************************************************************99999999998888888777766666555 PP

               TCP  66 ........ssssaseceaesssssasnsssg....................................kaaksaakskksqksaasalnlak.e 113
                               s s                   +                                     +++s++++ ++ +++ s l+l++ e
  PSME_00047211-RA 295 eaatinvfSES-------------------PsihgmsstndsqssregaltneghceihaaaqtallGKSSSSTSEGSRGADTYSGLSLSRsE 368
                       55444443222...................02222222222222333566667788999999999*98888888999999999999******* PP

               TCP 114 srakarararertrekmriknkln 137
                       sr kar+ra+er + k ++++ ++
  PSME_00047211-RA 369 SRVKARERAKERAKGKISTNDTQQ 392
                       **************9999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-36203385IPR005333Transcription factor, TCP
PROSITE profilePS5136932.29204262IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.381367384IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MNLQEPLSPW HVQPLSYLRL LRHYTEIKSD IVAAATGKVK VHWATSVQVK VAAHNKTAKN  60
FDQTLCATGD QELIVERMDC RNKSTYRKID FDFKTAVHCQ SIESQQKTEK GLGYSLVTLQ  120
SNLPVWSERE EELQGSRKVA DESRMNNIAV EAQKRKADQE LVERTRPQGQ HISIRGSDAG  180
AQFRLRPGLG HDSRIVRVSR ASGGKDRHSK VLTAKGLRDR RVRLSVSTAI QFYDLQDRLG  240
FDQPSKAVEW LIKSAADAID ELPVLNTHDL QSAITNASPS LHPHPPSNSN PGDNEAATIN  300
VFSESPSIHG MSSTNDSQSS REGALTNEGH CEIHAAAQTA LLGKSSSSTS EGSRGADTYS  360
GLSLSRSESR VKARERAKER AKGKISTNDT QQNHNEDSKG GVLHSFTGLL NNAGHVNGLE  420
NHSRSTTEDE DAALLHKRQR LVGLSISSRS NAVQHEQSHD SHNHNHHHHP SHVLENDPFH  480
DPQQLLHMGS LGLCSTTLMH LTPSVQSFSF PNSVAAAIFS PISLQRNEMA KSISPFCTSQ  540
DQQKHLPGNI AAFTSNPGLH NNPFLMTVDQ GEIQEQLQVP TITNDHMINF SVPGLSARET  600
LQSNSYNMNY MPFHHMQRIQ PTHQTTAIDN SQLQGFDTAR MMERPIQEFG IQGSRNSASK  660
GNKKHEHQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-24209263155Putative transcription factor PCF6
5zkt_B2e-24209263155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7111110.0KJ711111.1 Pinus tabuliformis clone PtTCP1 TCP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7C80.0A0A0K0M7C8_PINTB; TCP1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-38TCP family protein