PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00047069-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26792.9 Da PI: 5.0311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.6 | 7.5e-09 | 24 | 50 | 27 | 53 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53 +++r++lg+f tae+Aa+a+++a+ + PSME_00047069-RA 24 RKTRVWLGTFQTAEDAARAYDEAAVIM 50 359********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.167 | 1 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-10 | 10 | 62 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-9 | 13 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-4 | 24 | 47 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-16 | 24 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.64E-14 | 25 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
ARSDKGSFSW YRRYAGLPGI LAVRKTRVWL GTFQTAEDAA RAYDEAAVIM CGPQHAKTNF 60 TYDPSAPPSG KPSFLSAALT AKLRRFSLAS FNIEMQKGAA NKDHLQSPVM TPCLTRLRLD 120 KEKTNLENPS ESNWVMTVKF GRCSDQYQQP SLKQEETEDD IALEMIKELF HPTSIEFSCQ 180 SDTSDRSNGE NVTVEFDRCS DYQRHSLKQE TEDDIAAEMI EELFHPSSIE FSSQLNN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NPV7 | 5e-29 | A9NPV7_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-14 | ERF family protein |