PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00047064-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 208aa MW: 23687.3 Da PI: 5.9884 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.8 | 1.4e-06 | 68 | 98 | 16 | 46 |
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkv 46 +e+F+++++++ +++ LA++l+L rqV v PSME_00047064-RA 68 KEYFNEHNTLNSKQKLALAEQLNLRPRQVEV 98 6899*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 68 | 99 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMEPLRWRLS SFQMDFAICN GTCAVKRERD DDHPDNNAND HELDRVFSRA SDEEEDGRTS 60 RKKLHLSKEY FNEHNTLNSK QKLALAEQLN LRPRQVEVYG SITEEPDEAD RSGLLISEEM 120 PRNPYRREQV TAERYSIDEG FESGASKLLH ALACNHSLNM CPSCDRIASV SLPLDNNTKG 180 LHGHGPSPWP TLASAHLHTT RPPPRLEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NV75 | 2e-49 | A9NV75_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-16 | homeobox from Arabidopsis thaliana |