PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046905-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 394aa MW: 44392.9 Da PI: 7.001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046905-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.5	1.4e-32	55	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp G++F+Ptd++l+ ++L+ kv ++ l+ + + ++ +i++++P++Lp v+ e + +fF++ +k+y+tg+rk+r+ PSME_00046905-RA 55 LPSGVKFDPTDQQLI-QHLQGKVGVDDstphplLDRFIItLEGEdGICYTHPEKLP-GVSREGSIKHFFHRPSKAYTTGTRKRRKiqadsdhd 145 699**********.99988776676653333333555547******.555666778**************856666654 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128 + +W++tgk+++vl +g+++g+kk+Lv+yk g+++k+ekt+Wvmh+y+l PSME_00046905-RA 146 kGGETRWHKTGKTRPVLI-NGKHKGCKKILVLYKnfGKNKKPEKTSWVMHQYHL 198 433778********.9999******744699999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-34	47	217	IPR003441	NAC domain
PROSITE profile	PS51005	31.029	55	217	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	56	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MERFVDGKLL AEKPKTPTST CQLINAKLEE NRILQCHGCG HKIEREKAIG DCSGLPSGVK 60 FDPTDQQLIQ HLQGKVGVDD STPHPLLDRF IITLEGEDGI CYTHPEKLPG VSREGSIKHF 120 FHRPSKAYTT GTRKRRKIQA DSDHDKGGET RWHKTGKTRP VLINGKHKGC KKILVLYKNF 180 GKNKKPEKTS WVMHQYHLGS QEDEKEGELV VSKVFYQRQP RQCNLEKGAD IANGKKPSAQ 240 AINWKENRDS ESSECTPLWH TGNQAPEHAG MHPNVIREDW ACKLEQSKEG YVGLDEHQVT 300 RLLQCHETQM EGISNANLLS YSAQELNDVA EALGLSLNDQ EGPTQKIDRP LEDIFLYPPL 360 ELQKPFSNSQ ESDWLQYSLC PDSDNGGSHY GGLI

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MERFVDGKLL AEKPKTPTST CQLINAKLEE NRILQCHGCG HKIEREKAIG DCSGLPSGVK  60
FDPTDQQLIQ HLQGKVGVDD STPHPLLDRF IITLEGEDGI CYTHPEKLPG VSREGSIKHF  120
FHRPSKAYTT GTRKRRKIQA DSDHDKGGET RWHKTGKTRP VLINGKHKGC KKILVLYKNF  180
GKNKKPEKTS WVMHQYHLGS QEDEKEGELV VSKVFYQRQP RQCNLEKGAD IANGKKPSAQ  240
AINWKENRDS ESSECTPLWH TGNQAPEHAG MHPNVIREDW ACKLEQSKEG YVGLDEHQVT  300
RLLQCHETQM EGISNANLLS YSAQELNDVA EALGLSLNDQ EGPTQKIDRP LEDIFLYPPL  360
ELQKPFSNSQ ESDWLQYSLC PDSDNGGSHY GGLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT100869	1e-120	BT100869.1 Picea glauca clone GQ0047_M24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352582.1	1e-103	PREDICTED: uncharacterized protein LOC103943930 isoform X2
Swissprot	Q9M0F8	9e-99	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1R3J9P4	1e-102	A0A1R3J9P4_9ROSI; No apical meristem (NAM) protein
TrEMBL	E0ZFA1	1e-103	E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRING	XP_009352580.1	1e-103	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-101	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]