PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046767-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 110aa MW: 12567.2 Da PI: 10.4471 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W++ a++ g++R++k+c++rw++yl PSME_00046767-RA 17 RGAWTASEDKILSEYIKNHGDGGWRSLANRAGLKRCGKSCRLRWLNYL 64 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 70 | 110 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rg+ ++eEdellv++ ++lG++ W++Ia +++ gRt++++k++ PSME_00046767-RA 70 RGNISPEEDELLVRLLRLLGNR-WSLIAGRLP-GRTDNEIKNY 110 7999******************.*********.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 10 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.431 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.94E-28 | 15 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 22.85 | 65 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-21 | 68 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-7 | 69 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 70 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-4 | 90 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MGRSSSSSTH EDQTLNRGAW TASEDKILSE YIKNHGDGGW RSLANRAGLK RCGKSCRLRW 60 LNYLRPDIKR GNISPEEDEL LVRLLRLLGN RWSLIAGRLP GRTDNEIKNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-23 | 15 | 110 | 25 | 119 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131218 | 5e-98 | KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022756428.1 | 1e-55 | transcription factor MYB7-like | ||||
Swissprot | Q9FJA2 | 3e-49 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A2H4Z0B0 | 1e-63 | A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor | ||||
STRING | XP_004287618.1 | 5e-54 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-46 | myb domain protein 3 |