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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PSME_00046721-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 264aa MW: 29755.1 Da PI: 4.9868 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.5 | 7.4e-09 | 5 | 29 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
+ W++Ia +++ gRt++++k++w++++
PSME_00046721-RA 5 R-WSLIAGRLP-GRTDNEIKNYWNSHM 29
5.*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 13.769 | 1 | 33 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 8.07E-7 | 4 | 32 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 3.79E-6 | 5 | 29 | No hit | No description |
| Pfam | PF00249 | 1.6E-6 | 5 | 28 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 5 | 30 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 264 aa Download sequence Send to blast |
MHAFRWSLIA GRLPGRTDNE IKNYWNSHMR QNGVQLQAKA QSLKKRPKSP PLFENHVSRA 60 IPLKIKPNYS NGYGSTTNIP TSDVSLTFSN IRETTNSSKS GGCILGNDSI TEGGSKLMAF 120 GIVDVNLAQT EDRISVTSIS SLPDQKSRPS NDHFAGHEAI FDDSLFHLKD LFFPDCNMLP 180 WPSDISTDFA VEEFFTEPPT LDRERNQLEY ICSDQSNVQF VNSSTVAIGE GMEEFSDSTD 240 HVDWIHEIGY VTWKMNSEYM YVVQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 42 | 48 | LKKRPKS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G13540.1 | 9e-12 | myb domain protein 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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