PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046720-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9587.97 Da PI: 11.4166 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.8e-09 | 5 | 29 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W+ Ia +++ gRt++++k++w++++ PSME_00046720-RA 5 R-WSMIAGRLP-GRTDNEIKNYWNSHM 29 5.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.548 | 1 | 33 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-7 | 4 | 32 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-6 | 4 | 28 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-13 | 5 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.07E-7 | 5 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MHAFRWSMIA GRLPGRTDNE IKNYWNSHMR QNGVQLQAKA QSLKKRPKSP PPFENHASRA 60 IPLKIKPNCS NGYGSNTNIP TSMSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 48 | LKKRPKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | F8TJT0 | 4e-14 | F8TJT0_PINRE; MYB-like protein (Fragment) | ||||
TrEMBL | K7NJK3 | 4e-15 | K7NJK3_PINTA; Uncharacterized protein (Fragment) | ||||
TrEMBL | K7NK79 | 4e-15 | K7NK79_PINTA; Uncharacterized protein (Fragment) | ||||
TrEMBL | K7NME8 | 4e-15 | K7NME8_PINTA; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-13 | myb domain protein 5 |