PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046346-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 546aa MW: 60738.4 Da PI: 7.1511

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046346-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.8e-32	291	346	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ PSME_00046346-RA 291 KSRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 346 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-29	288	349	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.264	288	348	IPR017930	Myb domain
SuperFamily	SSF46689	7.39E-18	288	349	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-27	291	346	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	293	344	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MGSSAELTLN CGPSVTSASS VFKSISLVGD QLERMRRHEE YIKGLEEERR KIEAFKRELP 60 FCMQLINDAI EACKKQLADC ERASLHEDVQ NAPNTNVRPV LEEFIPIKKS SHLTENKPEE 120 NHVSKKARFY NGDRPNWMSS ANLWNPDPET IDSRKGGVIS MEESLKEQDS QHQVHSFPTN 180 NKLFSDSRGG GAFHPFSKER QVIAPRPVRS AVERTLPNLA LSSAEREVDS SLVGNETVCL 240 DRTTTTRTRS KETTEVHTPV HEKEEVSIIN GANTSPTTST PNTSQTQTQR KSRRCWSPEL 300 HRRFVNALQQ LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSPPSTNPQ 360 APQLVVLGGI WMPPEYAAHA AAAAQQGQGG IYNPLPTTVP CPPQSHYCQP AISQGHEYYC 420 QMNPAASKLQ LHHSVSLYCD QQQEEQHQTP SQSQNSPQGP LQCNGQSSGA RGTSADAGRE 480 ESVGEDGKSD SSSWKAEDSG ETTEVRNMGR GLSLRKQPHK FLDEDDGDVE DNRARVQMRK 540 QTLVGR

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MGSSAELTLN CGPSVTSASS VFKSISLVGD QLERMRRHEE YIKGLEEERR KIEAFKRELP  60
FCMQLINDAI EACKKQLADC ERASLHEDVQ NAPNTNVRPV LEEFIPIKKS SHLTENKPEE  120
NHVSKKARFY NGDRPNWMSS ANLWNPDPET IDSRKGGVIS MEESLKEQDS QHQVHSFPTN  180
NKLFSDSRGG GAFHPFSKER QVIAPRPVRS AVERTLPNLA LSSAEREVDS SLVGNETVCL  240
DRTTTTRTRS KETTEVHTPV HEKEEVSIIN GANTSPTTST PNTSQTQTQR KSRRCWSPEL  300
HRRFVNALQQ LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSPPSTNPQ  360
APQLVVLGGI WMPPEYAAHA AAAAQQGQGG IYNPLPTTVP CPPQSHYCQP AISQGHEYYC  420
QMNPAASKLQ LHHSVSLYCD QQQEEQHQTP SQSQNSPQGP LQCNGQSSGA RGTSADAGRE  480
ESVGEDGKSD SSSWKAEDSG ETTEVRNMGR GLSLRKQPHK FLDEDDGDVE DNRARVQMRK  540
QTLVGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-14	291	344	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-14	291	344	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-14	291	344	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-14	291	344	1	54	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115073	0.0	BT115073.1 Picea glauca clone GQ03608_I11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A171NYB9	0.0	A0A171NYB9_TAXWC; GARP2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-72	G2-like family protein