PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046046-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19307.1 Da PI: 6.1377 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 7.3e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++++kC+++Cvlapyfp+++p+kf vh+lFG +v+++l++lp+e+r da+sslvyeA+ar+ dPv+G+v+vi++l+ ++ q++++ PSME_00046046-RA 11 ACAACKFQKKKCSEKCVLAPYFPQNDPNKFLLVHRLFGHGHVVRILQDLPTEQRGDAVSSLVYEARARVADPVHGCVAVINNLHIKIVQMQSQ 103 7******************************************************************************************** PP DUF260 94 lallkee 100 la+++++ PSME_00046046-RA 104 LASAEAK 110 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.916 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-38 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
IMSQVSKAES ACAACKFQKK KCSEKCVLAP YFPQNDPNKF LLVHRLFGHG HVVRILQDLP 60 TEQRGDAVSS LVYEARARVA DPVHGCVAVI NNLHIKIVQM QSQLASAEAK LANINLQHAN 120 ILTLMSEYHQ VWDPNFYSAS PQESEDTQYM SPPILDDAIV DPMELWEIST WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 8 | 111 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 8 | 111 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LP64 | 1e-63 | B8LP64_PICSI; Uncharacterized protein | ||||
TrEMBL | B8LQI9 | 2e-63 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-37 | LOB domain-containing protein 1 |