PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00046045-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19670.2 Da PI: 5.2705 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131 | 5.1e-41 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk+++rkC+++C lapyfp+++p+kf vh+lFG +v+kll++lpee+r da+sslvyeA+ar+ dPv+G++gvi+++++++e+l+++ PSME_00046045-RA 14 ACAACKFQKRKCSEKCLLAPYFPHNDPNKFLLVHRLFGYGHVVKLLQKLPEEQRGDAVSSLVYEAKARVADPVHGCAGVINDMHKKIEELESQ 106 7******************************************************************************************** PP DUF260 94 lallkee 100 la+++++ PSME_00046045-RA 107 LASTQAK 113 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.813 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-39 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MLQIMSQSFR AETACAACKF QKRKCSEKCL LAPYFPHNDP NKFLLVHRLF GYGHVVKLLQ 60 KLPEEQRGDA VSSLVYEAKA RVADPVHGCA GVINDMHKKI EELESQLAST QAKLDNITLE 120 QSNIFSILIN AAGYHQGWDA NFYSASQQES RDTEYSNPPV LDEEVDSMEF IWEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-33 | 11 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-33 | 11 | 114 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019447910.1 | 2e-47 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-44 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 6e-57 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | XP_004487250.1 | 1e-45 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-46 | LOB domain-containing protein 1 |