PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045971-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19993 Da PI: 9.2045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 35.2 | 3.4e-11 | 25 | 62 | 8 | 45 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkl 45 + +kC+++Cvlapyfp ++++k+ +h++FG+ +v+ l PSME_00045971-RA 25 QHKKCSEKCVLAPYFPLDDSQKLMLLHRVFGNGHVMDL 62 789*****************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.806 | 17 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-8 | 25 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSGYGKYCSG GRDGVHIFLR CLQDQHKKCS EKCVLAPYFP LDDSQKLMLL HRVFGNGHVM 60 DLPAGQTQIF RLGKHSEHGV RNKPKTSRSC TWLSHCVGVI NDLQQSVAEL QLQLDSTRAQ 120 AQLASINLSH ANLSSQVTSS REVLITKYHE ALMVPHFVRC LTQCRRVKSH INNSTCFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LP64 | 7e-20 | B8LP64_PICSI; Uncharacterized protein | ||||
TrEMBL | B8LQI9 | 9e-20 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-14 | LOB domain-containing protein 1 |