PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045944-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 369aa    MW: 40400.7 Da    PI: 8.5971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045944-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd  l+++++  G+g +W + ++++g++R++k+c++rw++yl
  PSME_00045944-RA 14 RGPWSPEEDSALKEYIANNGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding38.13.5e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00045944-RA  69 GGFSQEEDNIICSLFMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.617962IPR017930Myb domain
SuperFamilySSF466891.84E-2511109IPR009057Homeodomain-like
SMARTSM007173.4E-111364IPR001005SANT/Myb domain
PfamPF002491.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231569IPR009057Homeodomain-like
CDDcd001674.38E-81662No hitNo description
PROSITE profilePS5129419.96963117IPR017930Myb domain
SMARTSM007171.3E-1067115IPR001005SANT/Myb domain
PfamPF002496.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2270117IPR009057Homeodomain-like
CDDcd001673.78E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSALKEYIA NNGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSQEEDNIIC SLFMSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKNKLIGK  120
DKGCQTRRLA EAKQESKDMQ SYGTSEANTS PNICGPQQQP RGVHQHTNIN MNGPYSSFGF  180
GINSQLFEQT CGATITESSS SSGPATCELN PQQVQLHQEV ADSNSCPWKL LQRLEGAVVN  240
HHDSNNMTMT NLKGGLCSPH VAGGLSLLSQ TLWMEMTDTN NIGNVSAWLT WKELFVTVAI  300
SCDETQTVLQ GLIGYVELKT LMDFMGPLGS KKSTLLDALT GRSATNVFQS GSSKLNGRKQ  360
KNSFGTAVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-124D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-79myb domain protein 84