PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045928-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 22125.1 Da PI: 9.0165 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl PSME_00045928-RA 20 KGAWSKEEDEVLISYIEAHGQGCWRSLPKAAGLQRCGKSCRLRWINYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.2e-19 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eEdel+++++ +lG++ W+ Ia+t++ gRt++q+k++w+++ PSME_00045928-RA 73 RGDFSQEEDELIIKLHSRLGNK-WSMIASTIP-GRTDNQIKNYWNTH 117 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 11 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.151 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-30 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-10 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 28.261 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 71 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-16 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.24E-12 | 76 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGSHRDMGRS PCCEKAHTRK GAWSKEEDEV LISYIEAHGQ GCWRSLPKAA GLQRCGKSCR 60 LRWINYLRPD LKRGDFSQEE DELIIKLHSR LGNKWSMIAS TIPGRTDNQI KNYWNTHIKK 120 KLLKEGVDPY THLPIIPDHG SFGFSSGNPV LPKRGCKPSE TPGTYLGQRI SSTGHDHAYD 180 EDVNLDLSIT LPSLRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781556.1 | 9e-80 | myb-related protein 308-like | ||||
Refseq | XP_010930777.1 | 2e-79 | myb-related protein 308 | ||||
Swissprot | O49608 | 7e-77 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A2H3XBZ6 | 2e-78 | A0A2H3XBZ6_PHODC; myb-related protein 308-like | ||||
TrEMBL | A0A3S3NKR8 | 3e-78 | A0A3S3NKR8_9MAGN; Myb-related protein 308-like protein | ||||
STRING | ERM93882 | 8e-79 | (Amborella trichopoda) | ||||
STRING | XP_008781556.1 | 3e-79 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 3e-79 | myb domain protein 32 |