PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045872-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18792.8 Da PI: 8.247 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.1 | 2.8e-13 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C+tV PSME_00045872-RA 74 CSGCRTLLVYPQGAPNVCCAVCNTV 98 ************************9 PP | |||||||
2 | zf-LSD1 | 30.7 | 5.1e-10 | 116 | 136 | 5 | 25 |
zf-LSD1 5 rtlLsYPrGApsVRCalCdtV 25 +tlL+Y rGA+sV+C++C tV PSME_00045872-RA 116 HTLLMYARGATSVQCSCCSTV 136 89*****************99 PP | |||||||
3 | zf-LSD1 | 40.4 | 4.9e-13 | 150 | 174 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +L+YP+GAps++CalC++V PSME_00045872-RA 150 CRNCFMTLMYPYGAPSIKCALCHFV 174 99*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.4E-13 | 71 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-12 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-9 | 110 | 138 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.9E-9 | 112 | 136 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.2E-9 | 147 | 177 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-12 | 150 | 174 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLSGGYSNRS DTTPVNNESA NAPIGSAPAR INSIQNNNPG AVRLGWGTMP LNMNPYPPQP 60 MPLPPPNGQG QLVCSGCRTL LVYPQGAPNV CCAVCNTVTA VPPGAEMARL ICGRFHTLLM 120 YARGATSVQC SCCSTVNLAM EANQVAHVNC RNCFMTLMYP YGAPSIKCAL CHFVTNVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071760 | 1e-176 | BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA. | |||
GenBank | EF084706 | 1e-176 | EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847710.1 | 4e-59 | protein LSD1 isoform X1 | ||||
Refseq | XP_010269986.1 | 5e-59 | PREDICTED: protein LSD1 | ||||
Refseq | XP_010269987.1 | 5e-59 | PREDICTED: protein LSD1 | ||||
Refseq | XP_010269988.1 | 5e-59 | PREDICTED: protein LSD1 | ||||
Refseq | XP_011624573.1 | 4e-59 | protein LSD1 isoform X1 | ||||
Swissprot | Q93ZB1 | 2e-55 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A9NTQ6 | 1e-92 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | ERN09291 | 2e-58 | (Amborella trichopoda) | ||||
STRING | XP_010269986.1 | 2e-58 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-42 | lsd one like 1 |
Publications ? help Back to Top | |||
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