PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045851-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 428aa MW: 46941.7 Da PI: 9.3651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045851-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	254	281	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 h + Er+RR++++++fe Lr+++P+ + PSME_00045851-RA 254 HHMISERKRREKLKESFEALRSVIPPgS 281 68899********************943 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.892	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-6	252	284	No hit	No description
SuperFamily	SSF47459	1.13E-7	253	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-7	254	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-5	254	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MSSSLNVPGL ALNQHPYIWL ISNELVRFSS HESQAEFYRV QPDEQNKFRI RSLLANITVS 60 PIISLPMATP TTSISTSPSR SSLLSRSIDT SGSSSMVSYL QHPTISRGDQ IDIPHQFSTS 120 ASELGGGFYP CNLQTLQLPL PSWLSISGHD HAETTLVYPG SSRQINLPGL QLSLQTSQLS 180 GFPVTPSARN MILTAFDMWK PPSKVLTPPV VKGQYRLKRC ITILKNIHAE RVGQSSMSGS 240 DRPPGETISG GQVHHMISER KRREKLKESF EALRSVIPPG SKVSYMKIQF LCPNELELNL 300 RRVQAPAQPC NNRAPEGGDS VVTVEVSKIG AGSSNSNSNP SDEMGIVVVV ERPTNTIDLM 360 IAVLRRLREM GVPLISMATS TTHDDRDPSR LQFRISATIK LQDEVVEMLK EGLMSALRKD 420 GGPSPPLL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MSSSLNVPGL ALNQHPYIWL ISNELVRFSS HESQAEFYRV QPDEQNKFRI RSLLANITVS  60
PIISLPMATP TTSISTSPSR SSLLSRSIDT SGSSSMVSYL QHPTISRGDQ IDIPHQFSTS  120
ASELGGGFYP CNLQTLQLPL PSWLSISGHD HAETTLVYPG SSRQINLPGL QLSLQTSQLS  180
GFPVTPSARN MILTAFDMWK PPSKVLTPPV VKGQYRLKRC ITILKNIHAE RVGQSSMSGS  240
DRPPGETISG GQVHHMISER KRREKLKESF EALRSVIPPG SKVSYMKIQF LCPNELELNL  300
RRVQAPAQPC NNRAPEGGDS VVTVEVSKIG AGSSNSNSNP SDEMGIVVVV ERPTNTIDLM  360
IAVLRRLREM GVPLISMATS TTHDDRDPSR LQFRISATIK LQDEVVEMLK EGLMSALRKD  420
GGPSPPLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	263	ERKRRE
2	259	264	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-10	bHLH family protein