PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045716-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 365aa    MW: 40892.4 Da    PI: 9.4137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045716-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-1854101148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd++lv +++++G g+W++ +++ g+ R++k+c++rw +yl
  PSME_00045716-RA  54 KGPWTPEEDKKLVAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 101
                       79******************************99************97 PP
2Myb_DNA-binding52.41.2e-16107152148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++  E++ +++++++lG++ W+tIa +++ +Rt++++k++w+++l
  PSME_00045716-RA 107 RGKFSMHEEQTIIQLHALLGNR-WSTIATHLP-KRTDNEIKNYWNTHL 152
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2545104IPR009057Homeodomain-like
PROSITE profilePS5129415.87349101IPR017930Myb domain
SuperFamilySSF466894.87E-3051148IPR009057Homeodomain-like
SMARTSM007175.3E-1453103IPR001005SANT/Myb domain
PfamPF002497.8E-1754101IPR001005SANT/Myb domain
CDDcd001671.44E-1056101No hitNo description
PROSITE profilePS5129424.95102156IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-25105156IPR009057Homeodomain-like
SMARTSM007174.9E-15106154IPR001005SANT/Myb domain
PfamPF002498.1E-15107152IPR001005SANT/Myb domain
CDDcd001674.94E-10109152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLAGCLLTI LCTTLTDIFA CLESFIDGAH YTKRPKWREI MGRAPCCEKA GLKKGPWTPE  60
EDKKLVAYIQ EHGHGSWRAL PQKAGLLRCG KSCRLRWANY LRPDIKRGKF SMHEEQTIIQ  120
LHALLGNRWS TIATHLPKRT DNEIKNYWNT HLKKRLLQMG IDPVTHKPKS ESMIAGAAQS  180
SNGSSNLSHM AQWESARLEA ESRLARESKL RAQGLWSASM INPNVSSDIF SRLRRASQGF  240
DSHKEAGLNS AGGFECMKIT QKWDKFQDLR LGTNSDQCNS SALGGSFSDC KPVENGRQSE  300
DRTSKTTYLS LLQQAMCPSA QGSKILYSEA KKLVESQNNR QTNAAAIPYN IAQSHENCDE  360
NNYNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25521565108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0872630.0EF087263.1 Picea sitchensis clone WS02737_G10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360604.11e-104PREDICTED: myb-related protein 330-like
TrEMBLA9P0V40.0A9P0V4_PICSI; Uncharacterized protein
STRINGXP_009360604.11e-104(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-97myb domain protein 16