PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045606-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29470.7 Da PI: 10.4379 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++v+++G g W + ++ g++R++k+c++rw++yl PSME_00045606-RA 21 RGAWTAEEDLILCEYVRLHGDGGWQKLRQKAGLKRCGKSCRLRWRNYL 68 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + E+el+++ +++lG++ W++Ia +++ gRt++++k++w+ + PSME_00045606-RA 74 RGNISYHEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 118 6788899***************.*********.***********966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-22 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.23 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-27 | 20 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-10 | 23 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-22 | 72 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.215 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-12 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.47E-10 | 81 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MRKKIFDMGR SPCWSKEVLN RGAWTAEEDL ILCEYVRLHG DGGWQKLRQK AGLKRCGKSC 60 RLRWRNYLRP DIKRGNISYH EEELIIRMHR LLGNRWSLIA GRLPGRTDNE IKNYWNFHMR 120 QNGVQLQAKA QSLKKRPKSP PPFENHVSRA IPLKIKPNCS NGYGSTTNIP TSDVSLTFSN 180 IRETTNSSKS GGCILGNDSI TEGGSKLMAF GMVDVNLAQT EDRISVTLIS SLPDQKSRPS 240 NDHFAGHEAI VDDRPVLSRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-24 | 19 | 121 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | LKKRPKS |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015954738.1 | 3e-61 | transcription factor MYB8-like | ||||
Refseq | XP_025677071.1 | 3e-61 | transcription factor MYB8-like | ||||
Swissprot | Q9S9K9 | 3e-54 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | F8TJT0 | 9e-82 | F8TJT0_PINRE; MYB-like protein (Fragment) | ||||
STRING | XP_002527968.1 | 9e-60 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-56 | myb domain protein 3 |