PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045603-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18405.1 Da PI: 8.3481 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.5e-40 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+l+pyf +p+kfanvhk+FGasnv+k+lk++pe++r +a++slvyeA+ar+ dPvyG++g+i +lq+q++ l++e PSME_00045603-RA 12 PCAACKLLRRRCAQGCPLSPYFSPVEPEKFANVHKVFGASNVSKMLKEVPESQRAEAANSLVYEANARLGDPVYGSTGTIYSLQRQVQVLQVE 104 7******************************************************************************************** PP DUF260 94 lallkee 100 l+++++e PSME_00045603-RA 105 LNAVRAE 111 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.18 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-40 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MGAPAAINTI TPCAACKLLR RRCAQGCPLS PYFSPVEPEK FANVHKVFGA SNVSKMLKEV 60 PESQRAEAAN SLVYEANARL GDPVYGSTGT IYSLQRQVQV LQVELNAVRA EVMRYKYKYR 120 DPVLQPPVLA LYDVCSDDCM VTNPTAGTVN SVDHTVKQGY YSFINHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 3 | 115 | 2 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 3 | 115 | 2 | 114 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843741.2 | 3e-63 | LOB domain-containing protein 15 | ||||
Refseq | XP_022743509.1 | 3e-63 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 1e-53 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | W1PCQ7 | 4e-62 | W1PCQ7_AMBTC; Uncharacterized protein | ||||
STRING | ERN05416 | 7e-63 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-53 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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