PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045457-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 421aa    MW: 46022.5 Da    PI: 6.7446
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045457-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like292.3e-092142343555
           G2-like  35 lmkvkgLtlehvkSHLQkYRl 55 
                       lm+v+gLt+e+v+SH QkYRl
  PSME_00045457-RA 214 LMNVQGLTRENVASHFQKYRL 234
                       8*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501448.578131IPR002083MATH/TRAF domain
Gene3DG3DSA:2.60.210.104.6E-4434IPR008974TRAF-like
SuperFamilySSF495994.74E-6433IPR008974TRAF-like
CDDcd001216.93E-5431No hitNo description
SuperFamilySSF546951.06E-2346172IPR011333SKP1/BTB/POZ domain
Gene3DG3DSA:3.30.710.102.8E-2649174No hitNo description
PfamPF006512.0E-2059171IPR000210BTB/POZ domain
SMARTSM002255.0E-1867177IPR000210BTB/POZ domain
PROSITE profilePS5009717.14867130IPR000210BTB/POZ domain
Gene3DG3DSA:1.10.10.609.6E-10213239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVGGYKHFLR RAMLESSYFV KDDTLKICCT VGVVFSAIQG PRLHYIHIPE SNLGQQFGEL  60
LEDVENADVT FDVSGEKFHA HRVVLAARSP VFKSMFFESS GEWNDKEISI EGTRPEVYKA  120
MLHFIYRDTL LDLEEHADLG EISDPSPCFL TPKKMIEYFL TAADRYGLCQ LRALSSLLGH  180
EMRDTMRMQS CIIFSGRNRN KENENSQEII HAMLMNVQGL TRENVASHFQ KYRLYLKRLS  240
GVASQQGSMG NAFGGGRESS FGSLCQVDGI GDLQVLAQSG HLSARALESL QAGVLGRLNG  300
SVGLGLPGLN SSGMLQFASL LGLGCNNSIG RAQGIAHVNN PMNAFPCLST GLELDQLQQK  360
QQIARLGDIG APMDDPAGFR TLHWKLIATN SSPVGLGGGS SGNILVHSTN NALVLQLMQP  420
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hqi_A2e-204174107263Speckle-type POZ protein
3hqi_B2e-204174107263Speckle-type POZ protein
3hu6_A2e-204174107263Speckle-type POZ protein
3hu6_B2e-204174107263Speckle-type POZ protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1044311e-172BT104431.1 Picea glauca clone GQ02810_E19 mRNA sequence.
GenBankEF6771001e-172EF677100.1 Picea sitchensis clone WS02761_M15 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.22e-23response regulator 1