PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045389-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YA

Protein Properties

Length: 371aa MW: 43711 Da PI: 10.9688

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045389-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	25.2	5.5e-08	28	59	4	36
CBFB_NFYA 4 lYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 ++VNaKQ++ Ilk R++R k ee++++ + +rk PSME_00045389-RA 28 VWVNAKQFRCILKQRAARLKWEETRRT-QLQRK 59 79*********************9997.44444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02045	1.6E-4	28	63	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDSHLASPIT NSLGQVKIAS SSKTGKWVWV NAKQFRCILK QRAARLKWEE TRRTQLQRKT 60 NKQTNKSLWQ RCGSTRGKSN IDPTLYSPTS TPLTWSSDLY VQELLNIKRR VEVLEVKEHE 120 RDLKIREETR RTQLQRKTNK QTNKSLWQRC GSTRGKSNIV PTLYSPTSTP LTWSSDLYVQ 180 ELLNIKRRVE VLEVKEHERD LKIREETRRT QLQRKTNKQT NKSLWQRCGS TRGKSNIVPT 240 LYSPTSTPLT WSSDLYVQEL LNIKRRVEVL EVKEHERDLK IREETRRTQL QRKTNKQTNK 300 SLWQRCGSTR GKSNIVPTLY SPTSTPLTWS SDLYVQELLN IKRRVEVLEV KEHERDLKIH 360 LLTVKNQRLA E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDSHLASPIT NSLGQVKIAS SSKTGKWVWV NAKQFRCILK QRAARLKWEE TRRTQLQRKT  60
NKQTNKSLWQ RCGSTRGKSN IDPTLYSPTS TPLTWSSDLY VQELLNIKRR VEVLEVKEHE  120
RDLKIREETR RTQLQRKTNK QTNKSLWQRC GSTRGKSNIV PTLYSPTSTP LTWSSDLYVQ  180
ELLNIKRRVE VLEVKEHERD LKIREETRRT QLQRKTNKQT NKSLWQRCGS TRGKSNIVPT  240
LYSPTSTPLT WSSDLYVQEL LNIKRRVEVL EVKEHERDLK IREETRRTQL QRKTNKQTNK  300
SLWQRCGSTR GKSNIVPTLY SPTSTPLTWS SDLYVQELLN IKRRVEVLEV KEHERDLKIH  360
LLTVKNQRLA E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-