PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00045149-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26423.2 Da PI: 8.7405 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.7 | 4.1e-44 | 9 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+ +yLkk++++++ + ++ i+++d+y+++Pw+Lp + + +ek+w+fF++rd+k+ +r+nr tksgyWkatg+d++v PSME_00045149-RA 9 IPGFRFYPTEEELLGFYLKKRLQRDHQPNLDIiIPTLDLYQYDPWELPvLASDVGEKQWFFFVPRDNKKC-RHRPNRLTKSGYWKATGSDRAV 100 69********************99997666666***************556677999**********975.79******************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykgrap g++t+W+m+ey++ PSME_00045149-RA 101 RNELCQCIGLKKILVFYKGRAPLGQRTEWIMNEYKM 136 **99999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-44 | 5 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.646 | 8 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNTEELTVIP GFRFYPTEEE LLGFYLKKRL QRDHQPNLDI IIPTLDLYQY DPWELPVLAS 60 DVGEKQWFFF VPRDNKKCRH RPNRLTKSGY WKATGSDRAV RNELCQCIGL KKILVFYKGR 120 APLGQRTEWI MNEYKMPDLS SSPSKIVSSH EQIKKVDMVL CRIYRKPTSQ NLDKEKLNFP 180 AGDESSYEYK CDSITFNGSS CQSNPMTEIN VSSSGEWRGN MFFYSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-40 | 5 | 169 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-40 | 5 | 169 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-40 | 5 | 169 | 14 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022897039.1 | 3e-55 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 4e-54 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A075M5N5 | 3e-79 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | XP_009764955.1 | 5e-54 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-56 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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