PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044998-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

CPP

Protein Properties

Length: 421aa MW: 45499.8 Da PI: 7.8273

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044998-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.8	6.6e-16	25	65	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ckks ClkkYCeCf+ + Cse+CkC dCkN e+ PSME_00044998-RA 25 KHNKGCHCKKSGCLKKYCECFQGNILCSENCKCIDCKNYEN 65 589***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	19.184	1	65	IPR005172	CRC domain
SMART	SM01114	8.2E-20	25	66	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.7E-12	28	63	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MLLTLFQNAV FQNQEDMGEQ LLPAKHNKGC HCKKSGCLKK YCECFQGNIL CSENCKCIDC 60 KNYENSEERR ALYQSDITGS LNYPQPVPNA PISGTTGPVG YSSPSPSKKR KTQEVLFSQA 120 SKEHASRQTS QSLQGSALKN ISTMNASNPP LSTVNGTGAF GIPSSKVIYR SLLADVVQTD 180 TVKGLCELLV IASREAANGC GAQTSLENGP LDKQAAKGSS LTNNKDSPES STQNEFRNEQ 240 FRDDRLESDQ GYKVAAGASS TNCAEEPEFD SGANSCKQRA MSPGTLALMC DEQDTLFTAP 300 SSPSGGCRRP CSHHTTHTFA EQERIILSEF RDCLRRIIDV GKRRATQYSA EAATAMRRNH 360 QPELNPHLSR PVPVTKTVTV PSSVPLSASS GPLMTEVNVS SSGSIRNGDK SDAVVTCRQQ 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MLLTLFQNAV FQNQEDMGEQ LLPAKHNKGC HCKKSGCLKK YCECFQGNIL CSENCKCIDC  60
KNYENSEERR ALYQSDITGS LNYPQPVPNA PISGTTGPVG YSSPSPSKKR KTQEVLFSQA  120
SKEHASRQTS QSLQGSALKN ISTMNASNPP LSTVNGTGAF GIPSSKVIYR SLLADVVQTD  180
TVKGLCELLV IASREAANGC GAQTSLENGP LDKQAAKGSS LTNNKDSPES STQNEFRNEQ  240
FRDDRLESDQ GYKVAAGASS TNCAEEPEFD SGANSCKQRA MSPGTLALMC DEQDTLFTAP  300
SSPSGGCRRP CSHHTTHTFA EQERIILSEF RDCLRRIIDV GKRRATQYSA EAATAMRRNH  360
QPELNPHLSR PVPVTKTVTV PSSVPLSASS GPLMTEVNVS SSGSIRNGDK SDAVVTCRQQ  420
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-13	25	74	83	132	Protein lin-54 homolog
5fd3_B	1e-13	25	74	83	132	Protein lin-54 homolog

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103736	0.0	BT103736.1 Picea glauca clone GQ02801_F13 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-72	Tesmin/TSO1-like CXC domain-containing protein