PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044986-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 451aa MW: 49455.4 Da PI: 8.5354

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044986-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.8e-06	204	227	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ Cg+ F++ + L++H+ H PSME_00044986-RA 204 FACSSCGQIFTTTDALEQHQAIkH 227 78******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.533	204	232	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	206	227	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.36E-23	229	449	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-20	232	449	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MGSHNNNTAS FLKGFQFALG VMILQIAVFF LVPNVSPATS LTPTRKKKGD LPSTPSPPLH 60 HVSSWAFKFK KLVTCMFDGS EIQEPTTRSA VISKGSNQRR SWIDCSGSGL CNIKDVAHGN 120 TRVMHRSEGE ISSHESGSSC TCNIQHEQSN HHDHHHAALG STGSAGSSSL RFSRGMHLTR 180 WSGCYECRMI VDPIQAFSFP ATIFACSSCG QIFTTTDALE QHQAIKHAVS ELGAEDSART 240 VVEIIFQSSW LKKENPICKI ERILKIHNSQ KTINKFEEYR DLVKAKANKL PKKHPRSIAD 300 GNELLRFHCT TFACSLGMNG CSSLCNLPSC NICNVIRNGF SPTPPKPEME GKGSGIYTTA 360 SSGKAHDYTQ LLLEELEEEL ASKGKGKRKR AMLVCRVIAG RVQKSQDPDD FIAGGFDSIA 420 GQAGLYSNLE ELLVYNPRAV LPCFVVIYQT S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MGSHNNNTAS FLKGFQFALG VMILQIAVFF LVPNVSPATS LTPTRKKKGD LPSTPSPPLH  60
HVSSWAFKFK KLVTCMFDGS EIQEPTTRSA VISKGSNQRR SWIDCSGSGL CNIKDVAHGN  120
TRVMHRSEGE ISSHESGSSC TCNIQHEQSN HHDHHHAALG STGSAGSSSL RFSRGMHLTR  180
WSGCYECRMI VDPIQAFSFP ATIFACSSCG QIFTTTDALE QHQAIKHAVS ELGAEDSART  240
VVEIIFQSSW LKKENPICKI ERILKIHNSQ KTINKFEEYR DLVKAKANKL PKKHPRSIAD  300
GNELLRFHCT TFACSLGMNG CSSLCNLPSC NICNVIRNGF SPTPPKPEME GKGSGIYTTA  360
SSGKAHDYTQ LLLEELEEEL ASKGKGKRKR AMLVCRVIAG RVQKSQDPDD FIAGGFDSIA  420
GQAGLYSNLE ELLVYNPRAV LPCFVVIYQT S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006847058.2	1e-118	uncharacterized protein LOC18436773
Refseq	XP_020524605.1	1e-118	uncharacterized protein LOC18436773
Refseq	XP_020524606.1	1e-118	uncharacterized protein LOC18436773
TrEMBL	A0A218WQ49	1e-116	A0A218WQ49_PUNGR; Uncharacterized protein
STRING	ERN08639	1e-116	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-94	C2H2-like zinc finger protein