PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044972-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRF
Protein Properties Length: 770aa    MW: 83410.1 Da    PI: 9.0158
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044972-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.2e-25312356145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e 
  PSME_00044972-RA 312 DPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKHVEG 356
                       79****************************************985 PP
2QLQ57.34.7e-20242277237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +F++aQ+q+L++Q+l++Ky++a  PvPpeL+ +i+k
  PSME_00044972-RA 242 PFSPAQWQELEHQALIFKYMMACIPVPPELIIPIRK 277
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.1E-12241277IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.3E-15242276IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.568242277IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.691312356IPR014977WRC domain
PfamPF088794.0E-21313355IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDNYSGGEGE RGRSSNLVSG LATENTLKQP AGMGGMMLVS STSPGKQQQR CRSVSEMEVD  60
GYRSGGVGGP TKIARTDGYA PFVCREQKMQ QIQMGSASAS ASASDHDHVL VQRNRSGSDN  120
SSACLVSEGR PRLAPSSTNS YASSERTNTT IFNNDGSSNT VSSESRIVLR SNDSVLLASS  180
TDATRPSSLR FYKPPTAFKC LYAIYAGMPV SSMATGTREI GGMGMGMGLG LHGVRTGDVR  240
PPFSPAQWQE LEHQALIFKY MMACIPVPPE LIIPIRKSLL TLPQRSPPLP HHHIPAFTPW  300
SPFHMGFGGN IDPEPGRCRR TDGKKWRCSR DVVPDQKYCE RHMHRGRHRS RKHVEGHTAA  360
VTCQSNSTSA TATATAPSAV TSSLNNVLPR PASISVNCSL QKLHQPAPLL GTKNLSSQIQ  420
QYPLQSAAGV VAASSPSSKD FRYVNGMKGG EMDEHILFSE SSNSSTMNNQ WRFMAASKAA  480
VPHSPLSKTN SNDSLLQYSS SPQLRTLPGQ NLGIIMTEGS QVASIHMNPH DKQHQQRQQH  540
SFLSTDYGRV QEAAMREPEE QPLRHFFDEW PRSRSRNPWA TDVEDETSNR SSSTTQLSIS  600
IPLPSSNSTP RGKLSLTSLK LSMSGDGSDP LGVDPIEMGL AVGMNMNVED PHRQTGHSHQ  660
QHHHHQANWV PITWGNPMEI GGPLAEVLQS STTPCGCNNN KPGLNLMNDI GWKDNINNSS  720
SSNKNSTSSR SRDSPPSCMQ ASSPTERGVT AARMGSAIDH PVPPHKGVGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1197240.0BT119724.1 Picea glauca clone GQ04109_E22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0M3LBH70.0A0A0M3LBH7_9SPER; Growth regulating factor 3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-44growth-regulating factor 5