PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044854-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 567aa    MW: 62132 Da    PI: 5.8005
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044854-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.31.7e-08244266124
           G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                       kpr++W+ eLH++Fv+av+ L G+
  PSME_00044854-RA 244 KPRVVWSVELHQQFVNAVNTL-GI 266
                       79*******************.55 PP
2Response_reg74.73.6e-25571651109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ + ll+++l++ +y +v+++ ++  al ll+e++  +Dl++ D+ mp+mdG++ll+    e  +lp+i+++a+ge + + + + 
  PSME_00044854-RA  57 VLVVDDDPICLLLLENLLRRCQY-NVTSCGQAITALSLLRENRdkFDLVISDVYMPDMDGFKLLEPVGLEL-DLPVIMMSANGETSAVMKGIT 147
                       89*********************.***************999889**********************5543.7******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel +
  PSME_00044854-RA 148 HGACDYLLKPVRLEELKN 165
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-3554178IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.8E-4254178No hitNo description
SMARTSM004482.4E-3155167IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.16856171IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2257165IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.93E-2258170No hitNo description
Gene3DG3DSA:1.10.10.602.3E-8241269IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGRSEGRLAV VTMQQSPHTN TSVVPGNLNM KDLKSNDRVK VMNDEEVNDD FPIGMRVLVV  60
DDDPICLLLL ENLLRRCQYN VTSCGQAITA LSLLRENRDK FDLVISDVYM PDMDGFKLLE  120
PVGLELDLPV IMMSANGETS AVMKGITHGA CDYLLKPVRL EELKNIWQHV VRKKRTESKD  180
CDNLDHGDGN DKFNHGAEDG ENGSSANDGT DRSWKMNKKR KEQNDDEDDD EDEHDIEDPS  240
TSKKPRVVWS VELHQQFVNA VNTLGIDRFF HWSLDFDVDM ISSWCRSCSK VNIGAYECSR  300
IDTRKCCKPS AGIKYRLYLK RLSSVVSQQG SMGNAFGGGR ESSFGSLFQV DGIGDLQVLA  360
QSGHLSTRAL ESLQAGVLGR LNRSVGLALP GLNSSGMLQF ASLPGLGCNN SIGRAQGIAP  420
VNNPMNAFPC LSTGLELDQL QQEQQIARLG DIGAPVDDPA GFRKMQRQLT ATNSSPIGLG  480
GGSSGNISVH STNNALVLQL MQQQQQKHGR GLTTLTTERT ISQRLGASDI KMVMSSQLPN  540
TNGNSGNWGN GAQCQLYQQM HVQCVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayx_A2e-111617592252Sensor kinase protein rcsC
2ayz_A5e-12481756131Sensor kinase protein rcsC
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RI591e-168A0A0C9RI59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18815_3529 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-87response regulator 2