PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044776-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Nin-like

Protein Properties

Length: 533aa MW: 60415.6 Da PI: 7.4463

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044776-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83	2.8e-26	382	431	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+ pi++A+++L+v+lT+LKr+CR++GI+RWPhRkiksl PSME_00044776-RA 382 ANIALKDLAKYFDVPITEASRSLKVGLTALKRKCREFGIPRWPHRKIKSL 431 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.872	366	451	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-22	383	431	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MAGDDVASLN AFPSHPLIYF SVWWTKCYHH QPHHFLHFMA MESYSASESS PSHLHLCALA 60 VFQNLLNEEL IKSVHLYQLQ DGTISAIQRE FMFFPSSYKQ IGLENIPPVH VCGKENLQEF 120 MANLQEGEER GLWICILHYN CNLRPINFTI PNILNLARNP ALKTIPELAI DLDRVARFKQ 180 ALDSSHPQKY LGEKMLNCEL TGMQSTFLGI EGFWPAIPGL TTVQDCIDDA LNRPSNVIEI 240 PLSIDQIDNS YGIKNICNED NPNPNPGQPI TPYLEGCSSC NPKEVGSITG NNSRCLEKDN 300 HTADQKSSLS IVDMAVIQSI DHSHVPQNLR NDASEDPSML CSKKTNQELP SGAGVKGQKR 360 RASSEEKDEN RQIHRAPTQR VANIALKDLA KYFDVPITEA SRSLKVGLTA LKRKCREFGI 420 PRWPHRKIKS LDSLIHDLQE EAKRQEREDK AAAMAAMKRT RILETERQKI EKKPGIDIQK 480 DTKRFRQDIF KRRHKARALK KKHEFSNSNS EDGDQSEEVP SVSTILSLMN HDR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MAGDDVASLN AFPSHPLIYF SVWWTKCYHH QPHHFLHFMA MESYSASESS PSHLHLCALA  60
VFQNLLNEEL IKSVHLYQLQ DGTISAIQRE FMFFPSSYKQ IGLENIPPVH VCGKENLQEF  120
MANLQEGEER GLWICILHYN CNLRPINFTI PNILNLARNP ALKTIPELAI DLDRVARFKQ  180
ALDSSHPQKY LGEKMLNCEL TGMQSTFLGI EGFWPAIPGL TTVQDCIDDA LNRPSNVIEI  240
PLSIDQIDNS YGIKNICNED NPNPNPGQPI TPYLEGCSSC NPKEVGSITG NNSRCLEKDN  300
HTADQKSSLS IVDMAVIQSI DHSHVPQNLR NDASEDPSML CSKKTNQELP SGAGVKGQKR  360
RASSEEKDEN RQIHRAPTQR VANIALKDLA KYFDVPITEA SRSLKVGLTA LKRKCREFGI  420
PRWPHRKIKS LDSLIHDLQE EAKRQEREDK AAAMAAMKRT RILETERQKI EKKPGIDIQK  480
DTKRFRQDIF KRRHKARALK KKHEFSNSNS EDGDQSEEVP SVSTILSLMN HDR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ078804	4e-99	FJ078804.2 Pinus taeda isolate 7711 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078805	4e-99	FJ078805.2 Pinus taeda isolate 7721 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078806	4e-99	FJ078806.2 Pinus taeda isolate 7709 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078807	4e-99	FJ078807.2 Pinus taeda isolate 7710 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078808	4e-99	FJ078808.2 Pinus taeda isolate 7718 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078809	4e-99	FJ078809.2 Pinus taeda isolate 7719 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078810	4e-99	FJ078810.2 Pinus taeda isolate 7713 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078811	4e-99	FJ078811.2 Pinus taeda isolate 7716 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078812	4e-99	FJ078812.2 Pinus taeda isolate 7714 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078813	4e-99	FJ078813.2 Pinus taeda isolate 7717 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078814	4e-99	FJ078814.2 Pinus taeda isolate 7715 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078815	4e-99	FJ078815.2 Pinus taeda isolate 7722 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078816	4e-99	FJ078816.2 Pinus taeda isolate 7723 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078818	4e-99	FJ078818.2 Pinus taeda isolate 7724 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078819	4e-99	FJ078819.2 Pinus taeda isolate 7707 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078820	4e-99	FJ078820.2 Pinus taeda isolate 7720 anonymous locus 0_6885_01 genomic sequence.
GenBank	FJ078821	4e-99	FJ078821.2 Pinus taeda isolate 7712 anonymous locus 0_6885_01 genomic sequence.
GenBank	JQ261363	4e-99	JQ261363.1 Pinus radiata isolate 7725 hypothetical protein (0_6885_01) gene, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-37	RWP-RK domain-containing protein