PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00044524-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18526.2 Da PI: 8.3637 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.6 | 6.1e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+CakdC++apyfp+++p+kfa vh++FGasnv kll++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++ PSME_00044524-RA 14 PCAACKLLRRRCAKDCIFAPYFPSDDPNKFASVHRVFGASNVNKLLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAILKSQ 106 7******************************************************************************************** PP DUF260 94 lallkee 100 lal+++e PSME_00044524-RA 107 LALAQAE 113 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.201 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-44 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRETISKSSN GMSPCAACKL LRRRCAKDCI FAPYFPSDDP NKFASVHRVF GASNVNKLLQ 60 DLPEEQRGDA VSSMVYEANA RVRDPIYGCV GAISSLQQQV AILKSQLALA QAEIVHLKMR 120 QTSLPALFTN SNTKMMMMDE GSSLTSLAEG YAFDDANLSS SNLYSKKCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 13 | 115 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 13 | 115 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107440 | 1e-170 | BT107440.1 Picea glauca clone GQ03107_I11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294159.1 | 9e-72 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 2e-60 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2P6Q8S7 | 1e-68 | A0A2P6Q8S7_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004294159.1 | 4e-71 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-63 | LOB domain-containing protein 4 |