PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 186aa    MW: 20910.8 Da    PI: 8.9763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-0974122355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i + +  L++l+P +    sk   Ka +L + ++Y++sLq
  PSME_00044409-RA  74 NSHSLAERVRREKISEQMKFLQDLVPGC----SKATGKAVMLDEIINYVQSLQ 122
                       58*************************9....7779****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1769140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-969126No hitNo description
PROSITE profilePS5088815.11671121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1772140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-674122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-977127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDLITEAVHG LKGMKYKTVE GVKEKDDVKY KVEQNASAKT GEGSPKQAKD NIQTSEPPKE  60
DYIHVRARRG QATNSHSLAE RVRREKISEQ MKFLQDLVPG CSKATGKAVM LDEIINYVQS  120
LQRQVEFLSM KLAAVNPRME FNVEGILAKD LSHVWDNDLQ SVIQMGFVQN NHTPLTSQGN  180
SDKLKI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707739.12e-67transcription factor bHLH49 isoform X2
SwissprotQ9CAA91e-56BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2H5QLN72e-65A0A2H5QLN7_CITUN; Uncharacterized protein
TrEMBLB8LLM28e-65B8LLM2_PICSI; Uncharacterized protein
STRINGERN100311e-63(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]