PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044284-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 315aa    MW: 34472.5 Da    PI: 9.4341
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044284-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.61.1e-07291314528
                       CHHHCHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                       +r++r++kNRe+A rsR+RK+a++
  PSME_00044284-RA 291 RRQKRMIKNRESAARSRARKQARC 314
                       79********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-6281314No hitNo description
CDDcd147071.03E-12291313No hitNo description
PROSITE patternPS000360294309IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLSSNGGRTP QFQPIVRQNS LYNLTLEEVQ NQLGDASKPL SSMNMDELLK NIWTAEESQA  60
ISMAMGNGPI NGVSTNSAPA SSGLQRQGSL TIPRTLSRKT VDEVWRDIQQ NQGKGNEEKK  120
PQQRQSTFGE MTLEDFLVKA GVVREDNNGT SNTNNNGAVT VGIPEVPQPV SVCGVPTAGI  180
GMDAIAAQNL QQQAEWYQYQ LNTAQQQQQQ QQQQQQQQQQ QQSMMVAYGA KRAVPPNGPL  240
GMPGNPLLEG GYGDNQLALS SPLMGCTSSD SQTPGRKRGA PESIIEKTVE RRQKRMIKNR  300
ESAARSRARK QARCF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1023120.0BT102312.1 Picea glauca clone GQ0177_O09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011620691.17e-89ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
TrEMBLA0A0D6QWG11e-135A0A0D6QWG1_ARACU; Uncharacterized protein
STRINGERM990094e-88(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.21e-42abscisic acid responsive element-binding factor 1