PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00044188-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 40847.4 Da PI: 9.6344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 7 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed +l ++++ +G g +W+ +++ g++R++k+c++rw +yl PSME_00044188-RA 7 RGVWTKQEDIILSEYIRIHGDGcRWTNLPKKTGLKRSGKSCRLRWTNYL 55 899********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00044188-RA 61 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 106 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.49 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.83E-25 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-11 | 6 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-12 | 7 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.98E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.517 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 61 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVKALHRGVW TKQEDIILSE YIRIHGDGCR WTNLPKKTGL KRSGKSCRLR WTNYLRPDIK 60 RGNISPDEED LIIRLHRLLG NRWSLIAGRL PGRTDNEIKN YWNTHLSKKL RLSMKQSETS 120 SRTKNLKTTP NHLKTTPNHL KTTPNHIAFK TIAVKITRAS TVRPIGFNGY GISDYRCSDG 180 AFKSAVQGPK IYHIVFKTIA VKIARASTVR PISFYGYGFS DYRCSDEAFK SCKNKESTER 240 ISFVIADANL VGGRNTTTYS QSSLEEEESG PYIDHIAGDI ATLHDNLFDL NELSFTQWNL 300 PFSPSDCSTD VELEEFNRVA AAQMNEFEDI LVLLSKALKF LRSLTMEEWE NFTTIQNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-22 | 5 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116752 | 1e-100 | BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence. | |||
GenBank | KU131219 | 1e-100 | KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-51 | myb domain protein 3 |