PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00044155-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 29815.5 Da PI: 8.826 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++ +G g+W ++++ g+ R++ +c++rw++yl PSME_00044155-RA 14 KGAWTQEEDHRLIAYIRNHGEGSWCSVPKAAGLLRCGRSCRLRWNNYL 61 79******************************99*************7 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+++++Ed+l+++++ +G++ W+ I+++++ gRt+++++++w+++ PSME_00044155-RA 68 GNFSEQEDDLIIQLHSIFGNK-WSIISKRLP-GRTDNEIRNHWNSH 111 89*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.881 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.56 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGKPPCCDKA HHNKGAWTQE EDHRLIAYIR NHGEGSWCSV PKAAGLLRCG RSCRLRWNNY 60 LRPDLRHGNF SEQEDDLIIQ LHSIFGNKWS IISKRLPGRT DNEIRNHWNS HIKKKLVKRG 120 LDPQTHRPLC SRQNSNTARS SQPAPKCQLV PEFERSGTSE ITDFFQQDRL ERSSPVHPIS 180 SDGEEHPDLN LDLCISLACN SSRASNRVTS VDDLCIRLPR NSSRASNRVT ASGLDLCISL 240 PYNSSWASNR VTSGLDLCIS LPSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799190.1 | 2e-77 | myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 2e-75 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A3G6JFH7 | 2e-95 | A0A3G6JFH7_PINTA; Myb-related protein 4 | ||||
TrEMBL | A5JYF4 | 8e-96 | A5JYF4_PICGL; R2R3-MYB transcription factor MYB10 | ||||
STRING | XP_008799190.1 | 8e-77 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-66 | myb domain protein 4 |