PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043973-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 347aa    MW: 39544.4 Da    PI: 6.1308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043973-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed  l ++++ +G g W+ I+++ g++R++k+c++rw++yl
  PSME_00043973-RA 14 RGAWTKKEDMVLSEYIRIHGDGGWRNIPKRAGLKRCGKSCRLRWLNYL 61
                      89********************************************97 PP
2Myb_DNA-binding53.45.8e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++++
  PSME_00043973-RA  67 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 112
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.032961IPR017930Myb domain
SuperFamilySSF466894.21E-2812108IPR009057Homeodomain-like
SMARTSM007175.3E-121363IPR001005SANT/Myb domain
PfamPF002495.7E-141461IPR001005SANT/Myb domain
CDDcd001679.07E-91661No hitNo description
PROSITE profilePS5129426.72962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007174.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1567111IPR001005SANT/Myb domain
CDDcd001672.52E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTKK EDMVLSEYIR IHGDGGWRNI PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HMSKKLLNES  120
VLKTLPDLKT RSKSPSPLQN HVFKANPVKI KTVVRPSYIK ETTRYPLVKD STREGKSEPI  180
DFAKTHNLVE TEAAKSTFSM SSSAEKQFLE SNMRFDGATL AESLSYLHEL ESPNSNLLSY  240
PSDYSSDFGL EEFYSAPATM VPEANQFEDM GCDQNNMERA NSFTMAGDQA GMEELFDNTE  300
HLDWIHEVNY LEKSSSQPLN LLLLESEDEW QERATGKAAP EDSEQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844495.11e-75PREDICTED: transcription factor MYB12-like isoform X2
SwissprotQ9S9K98e-66MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9011e-171A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_004287618.12e-73(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-59myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]