PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00043807-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 557aa MW: 62467.7 Da PI: 5.9797 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 114 | 161 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv+ ++++G g+W+++++ g+ R++k+c++rw +yl PSME_00043807-RA 114 KGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 161 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.7 | 1.3e-13 | 167 | 210 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l+++++ lG++ W+ Ia +++ gRt++++k+ w++ PSME_00043807-RA 167 RGTFSPQEESLIIELHGVLGNR-WSQIATHLP-GRTDNEIKNLWNS 210 899*******************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF64158 | 7.45E-7 | 46 | 100 | IPR011258 | BPG-independent PGAM, N-terminal |
Gene3D | G3DSA:3.40.1450.10 | 9.5E-6 | 46 | 94 | IPR011258 | BPG-independent PGAM, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 106 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.721 | 109 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-29 | 112 | 208 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 113 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 114 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 117 | 161 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 165 | 216 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-12 | 166 | 214 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.642 | 166 | 216 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-12 | 167 | 210 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-8 | 169 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006007 | Biological Process | glucose catabolic process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004619 | Molecular Function | phosphoglycerate mutase activity | ||||
GO:0030145 | Molecular Function | manganese ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MLETLSRTKE GIGSTSRHAI DYEKYSLAGE NGKHVNFDFD FGCRAKLVDY ALASGKINEG 60 EGFKYIKECF ENGTLHLIGL LSDGGVNWRI DQLQWELRRL MGRHSCCYKQ KLRKGLWSPE 120 EDEKLVRHIT KYGHGCWSAV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SPQEESLIIE 180 LHGVLGNRWS QIATHLPGRT DNEIKNLWNS CIKKKLRQRG IDPNTHRPLS ELNAEAEDNK 240 NDSSNKKVET QVAMDESHFS AGNEFKHLNA DTPNPKFFHV PVEDNSLFAS DSQAMLHNGF 300 MNSNNSTTTT TSTASAANIS LPKEFFLERF NSVNATPASV EPGFNFINQT STAQGFTAEK 360 DHKLIDNPVL WVLQAPSRSV GFPTENLMPW PGQVSDKSVS DAFSDFSSDV CDYNSIMANP 420 SMYRPGPCLS SLLYSEKSLD QDLLDNAGTN CMNGAAQYWD NTENNNNNMR TSSRSSSCNS 480 STANLEVNNG AAFGHFWGFV ATRNMIDMAA MLNEMEENAS QIEDHVSMID NVQELVSKID 540 VLQEQVSYDF ISSLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 112 | 216 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601071 | 0.0 | EF601071.1 Picea glauca R2R3-MYB transcription factor MYB8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYF2 | 0.0 | A5JYF2_PICGL; R2R3-MYB transcription factor MYB8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-85 | myb domain protein 61 |