PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043807-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 557aa    MW: 62467.7 Da    PI: 5.9797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043807-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-17114161148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
  PSME_00043807-RA 114 KGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 161
                       678*******************************************97 PP

2Myb_DNA-binding42.71.3e-13167210146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++++E+ l+++++  lG++ W+ Ia +++ gRt++++k+ w++
  PSME_00043807-RA 167 RGTFSPQEESLIIELHGVLGNR-WSQIATHLP-GRTDNEIKNLWNS 210
                       899*******************.*********.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF641587.45E-746100IPR011258BPG-independent PGAM, N-terminal
Gene3DG3DSA:3.40.1450.109.5E-64694IPR011258BPG-independent PGAM, N-terminal
Gene3DG3DSA:1.10.10.601.2E-27106164IPR009057Homeodomain-like
PROSITE profilePS5129424.721109165IPR017930Myb domain
SuperFamilySSF466893.29E-29112208IPR009057Homeodomain-like
SMARTSM007172.5E-13113163IPR001005SANT/Myb domain
PfamPF002493.8E-15114161IPR001005SANT/Myb domain
CDDcd001671.85E-11117161No hitNo description
Gene3DG3DSA:1.10.10.603.5E-24165216IPR009057Homeodomain-like
SMARTSM007174.9E-12166214IPR001005SANT/Myb domain
PROSITE profilePS5129419.642166216IPR017930Myb domain
PfamPF002492.2E-12167210IPR001005SANT/Myb domain
CDDcd001672.82E-8169209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006007Biological Processglucose catabolic process
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004619Molecular Functionphosphoglycerate mutase activity
GO:0030145Molecular Functionmanganese ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLETLSRTKE GIGSTSRHAI DYEKYSLAGE NGKHVNFDFD FGCRAKLVDY ALASGKINEG  60
EGFKYIKECF ENGTLHLIGL LSDGGVNWRI DQLQWELRRL MGRHSCCYKQ KLRKGLWSPE  120
EDEKLVRHIT KYGHGCWSAV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SPQEESLIIE  180
LHGVLGNRWS QIATHLPGRT DNEIKNLWNS CIKKKLRQRG IDPNTHRPLS ELNAEAEDNK  240
NDSSNKKVET QVAMDESHFS AGNEFKHLNA DTPNPKFFHV PVEDNSLFAS DSQAMLHNGF  300
MNSNNSTTTT TSTASAANIS LPKEFFLERF NSVNATPASV EPGFNFINQT STAQGFTAEK  360
DHKLIDNPVL WVLQAPSRSV GFPTENLMPW PGQVSDKSVS DAFSDFSSDV CDYNSIMANP  420
SMYRPGPCLS SLLYSEKSLD QDLLDNAGTN CMNGAAQYWD NTENNNNNMR TSSRSSSCNS  480
STANLEVNNG AAFGHFWGFV ATRNMIDMAA MLNEMEENAS QIEDHVSMID NVQELVSKID  540
VLQEQVSYDF ISSLIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-281122165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010710.0EF601071.1 Picea glauca R2R3-MYB transcription factor MYB8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF20.0A5JYF2_PICGL; R2R3-MYB transcription factor MYB8
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-85myb domain protein 61