PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043741-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 385aa    MW: 43251.2 Da    PI: 4.9389
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043741-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-133382148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ed++l +++ + G    tW+ +a+  g+ R++k+c++rw +yl
  PSME_00043741-RA 33 KGLWSPDEDKKLFNYIIKNGLQgcTWTYVAKQAGLQRCGKSCRLRWCNYL 82
                      678*****************99**************************97 PP

2Myb_DNA-binding37.65.1e-1288130145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg+ + +E+++++++   lG++ W +Ia+ ++ gRt+ ++k++w+
  PSME_00043741-RA  88 RGPISSQEEQRIIHLQSILGNR-WCKIASSLP-GRTDSEIKNYWN 130
                       78999*****************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0492882IPR017930Myb domain
SuperFamilySSF466893.01E-2431129IPR009057Homeodomain-like
SMARTSM007175.5E-73284IPR001005SANT/Myb domain
PfamPF002498.2E-123382IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-193489IPR009057Homeodomain-like
CDDcd001673.07E-63682No hitNo description
PROSITE profilePS5129420.37783137IPR017930Myb domain
SMARTSM007171.4E-1287135IPR001005SANT/Myb domain
PfamPF002497.2E-1088130IPR001005SANT/Myb domain
CDDcd001677.65E-990130No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2190137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEGNTEKLKM MRSTKGQRQR QGAPFHSNAE LRKGLWSPDE DKKLFNYIIK NGLQGCTWTY  60
VAKQAGLQRC GKSCRLRWCN YLRPGLKRGP ISSQEEQRII HLQSILGNRW CKIASSLPGR  120
TDSEIKNYWN CCIKKKLMNL KSCRPSSSGS CEHPNPVSVD HEALGCTITK TIPPVVDISD  180
SLKGNVIEND GLMIINENEI TGDYSWLTSS VNYHSNTTDF TYVYPVTYNT LEDAGSLHEK  240
TAQPSFLPLT NPSYYIDQYC DVQADNESKD RVILSMPTYN VNNPSIPIEL QDGDHRDCST  300
IFPNGEAFIN VQNTDLQDQD QNGEAGGGSG AFDFEWELGE GIWTEGEQLH NMFETGIAAS  360
SSNSYLDEIW PSPFDDVLSN LLGRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23301374108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.13e-48myb domain protein 50