PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00043741-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 43251.2 Da PI: 4.9389 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 33 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l +++ + G tW+ +a+ g+ R++k+c++rw +yl PSME_00043741-RA 33 KGLWSPDEDKKLFNYIIKNGLQgcTWTYVAKQAGLQRCGKSCRLRWCNYL 82 678*****************99**************************97 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5.1e-12 | 88 | 130 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ + +E+++++++ lG++ W +Ia+ ++ gRt+ ++k++w+ PSME_00043741-RA 88 RGPISSQEEQRIIHLQSILGNR-WCKIASSLP-GRTDSEIKNYWN 130 78999*****************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.049 | 28 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-24 | 31 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-7 | 32 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-12 | 33 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 34 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-6 | 36 | 82 | No hit | No description |
PROSITE profile | PS51294 | 20.377 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-12 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-10 | 88 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.65E-9 | 90 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 90 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEGNTEKLKM MRSTKGQRQR QGAPFHSNAE LRKGLWSPDE DKKLFNYIIK NGLQGCTWTY 60 VAKQAGLQRC GKSCRLRWCN YLRPGLKRGP ISSQEEQRII HLQSILGNRW CKIASSLPGR 120 TDSEIKNYWN CCIKKKLMNL KSCRPSSSGS CEHPNPVSVD HEALGCTITK TIPPVVDISD 180 SLKGNVIEND GLMIINENEI TGDYSWLTSS VNYHSNTTDF TYVYPVTYNT LEDAGSLHEK 240 TAQPSFLPLT NPSYYIDQYC DVQADNESKD RVILSMPTYN VNNPSIPIEL QDGDHRDCST 300 IFPNGEAFIN VQNTDLQDQD QNGEAGGGSG AFDFEWELGE GIWTEGEQLH NMFETGIAAS 360 SSNSYLDEIW PSPFDDVLSN LLGRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-23 | 30 | 137 | 4 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 3e-48 | myb domain protein 50 |