PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043647-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 411aa MW: 45798.3 Da PI: 6.9336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043647-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk++l+ m+vkgLtl+h+kSHLQkYRl PSME_00043647-RA 51 KPRLRWTPELHERFVDAVTQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.183	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-32	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-10	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	147	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYQMEYPSNP GIVLNHGRAP SQPERQHQQP ALTGSSHYPC DPGVVVSADP KPRLRWTPEL 60 HERFVDAVTQ LGGPDKATPK SVLREMGVKG LTLYHLKSHL QKYRLGKQPH REVSVDRSND 120 GGSSDGGHCL SRMARDGSIT PNHKEAMQIA DALRAQIEVQ RRLHDQLEVQ RRLQLRIEAQ 180 GKYLQAILEK AQQTLASEVS TSAGLEATRA KLADLASKLP TNSVKPNYSA MKVAPLMDMH 240 RQDHADLELK PHLRDRCSQN QFAGHGMEQS GNESESPNEK KRCRTLFHES NAGHHSPSRL 300 RELGLNASAC KTEDEEEDEE EEEDDLIKPT TVERPAATRT LVDERMAMLV QSNGLSLIQA 360 DHEPGLYHPP SMLGNCRKVA EGLDLNRKGE GSVPQQGREL DLNAYAFGWG R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYQMEYPSNP GIVLNHGRAP SQPERQHQQP ALTGSSHYPC DPGVVVSADP KPRLRWTPEL  60
HERFVDAVTQ LGGPDKATPK SVLREMGVKG LTLYHLKSHL QKYRLGKQPH REVSVDRSND  120
GGSSDGGHCL SRMARDGSIT PNHKEAMQIA DALRAQIEVQ RRLHDQLEVQ RRLQLRIEAQ  180
GKYLQAILEK AQQTLASEVS TSAGLEATRA KLADLASKLP TNSVKPNYSA MKVAPLMDMH  240
RQDHADLELK PHLRDRCSQN QFAGHGMEQS GNESESPNEK KRCRTLFHES NAGHHSPSRL  300
RELGLNASAC KTEDEEEDEE EEEDDLIKPT TVERPAATRT LVDERMAMLV QSNGLSLIQA  360
DHEPGLYHPP SMLGNCRKVA EGLDLNRKGE GSVPQQGREL DLNAYAFGWG R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118876	0.0	BT118876.1 Picea glauca clone GQ04011_G07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403235.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403236.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403237.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403238.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403239.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	1e-70	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3G6JCJ0	0.0	A0A3G6JCJ0_PINTA; Myb family transcription factor PHL3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-70	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]