PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043593-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 463aa    MW: 51605.6 Da    PI: 6.9876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043593-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.63.1e-461572826128
               NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                        FhPtdeel+ +yL+kkv++++l++ ++i+e+d+yk++PwdLp+k+  +e+ewyfFs+rd+ky++g+r+nr++ sgyWkatg++k++++    
  PSME_00043593-RA 157 TFHPTDEELLIHYLEKKVSSSPLPA-SIIAEIDLYKHDPWDLPAKACFGEQEWYFFSPRDRKYPNGERPNRSAGSGYWKATGTEKPIVTMsgs 248
                       6************************.89***************8777899**************************************98777 PP

               NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++vg+kk+Lvfy g+  kg kt+W+m+eyrl
  PSME_00043593-RA 249 kSSQKVGVKKSLVFYIGKPLKGLKTNWIMQEYRL 282
                       77788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5940IPR003441NAC domain
PROSITE profilePS5100553.751152307IPR003441NAC domain
SuperFamilySSF1019413.4E-56157307IPR003441NAC domain
PfamPF023652.9E-23157282IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
AAHPLSGEKI SSSPLPALII VEIDLYKHDP WDLPGMFRGT RVVFLQPEGP EICQRRTAKE  60
ICWLGLLEGH GNRKSNRYQV EKHIVGESGS EEIPVLCRIY KKVSHSPTVV LCPELEAPSA  120
TDVSRTQQKS AILKSNSFSG MLQSKGPFME IFLNHATFHP TDEELLIHYL EKKVSSSPLP  180
ASIIAEIDLY KHDPWDLPAK ACFGEQEWYF FSPRDRKYPN GERPNRSAGS GYWKATGTEK  240
PIVTMSGSKS SQKVGVKKSL VFYIGKPLKG LKTNWIMQEY RLAETMPTKG NRSMRLDEWV  300
LCRIYKKVSH SPTVVSSPEL EAPSATDVAG TKQESAMPTN FSSFSGTLQS EGLFMESFLD  360
HATSDANGAL SHVDPSSTLQ VVAQQLNSSV YPAKWQNTWN PFSLLALQPS NPYDVAVAVA  420
VPDEHMYRLP FNENWNPETP AWPLPTGTCS DRLTTDNFGI FLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-6515831126172NAC domain-containing protein 19
3swm_B8e-6515831126172NAC domain-containing protein 19
3swm_C8e-6515831126172NAC domain-containing protein 19
3swm_D8e-6515831126172NAC domain-containing protein 19
3swp_A8e-6515831126172NAC domain-containing protein 19
3swp_B8e-6515831126172NAC domain-containing protein 19
3swp_C8e-6515831126172NAC domain-containing protein 19
3swp_D8e-6515831126172NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABS01e-100D5ABS0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-68NAC domain containing protein 47