PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043566-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 465aa MW: 51938.2 Da PI: 8.1359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043566-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	64	118	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFveav++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl PSME_00043566-RA 64 KPRLRWTAELHDRFVEAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 118 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.299	61	121	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-30	62	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-15	63	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-9	66	117	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-26	174	220	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MNSFVSNFKS QPENRNSTSK LTAQTEKMYQ VKKPTMESHS ERPAMLQEVN VSTETGLVLS 60 TDPKPRLRWT AELHDRFVEA VTKLGGPDKA TPKAVRTRMG VEGLTLYHLK SHLQKYRLGK 120 QPHKEVSVDT SRDGLPHGGP VTGYGSTACR VAEVQVACNS VPSIIPPNMT DTLQITEALR 180 MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYL QSILEKARET LAGYNLGSIG LEATRAELSE 240 LASKVKSECF RSTLSALNFS TIPEIPGLFP ESQIAHQQSQ AADCSTYSCL TSNESSEKSP 300 TENLQAGGRK RPRSAYDNKV QFWQDEIRED MRLQDLTGEE NLSSPSSRTK DSSHVFHERS 360 TSDIVQAEKS GNRLSDKKGK ECDMNGVLVD PPITRTLAFS NALSLQENSQ MYEATKVYTN 420 QDKTRSKGYN KFSKMAEGLD LNSNGDTTVS SKERELDLNG FGWSR

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MNSFVSNFKS QPENRNSTSK LTAQTEKMYQ VKKPTMESHS ERPAMLQEVN VSTETGLVLS  60
TDPKPRLRWT AELHDRFVEA VTKLGGPDKA TPKAVRTRMG VEGLTLYHLK SHLQKYRLGK  120
QPHKEVSVDT SRDGLPHGGP VTGYGSTACR VAEVQVACNS VPSIIPPNMT DTLQITEALR  180
MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYL QSILEKARET LAGYNLGSIG LEATRAELSE  240
LASKVKSECF RSTLSALNFS TIPEIPGLFP ESQIAHQQSQ AADCSTYSCL TSNESSEKSP  300
TENLQAGGRK RPRSAYDNKV QFWQDEIRED MRLQDLTGEE NLSSPSSRTK DSSHVFHERS  360
TSDIVQAEKS GNRLSDKKGK ECDMNGVLVD PPITRTLAFS NALSLQENSQ MYEATKVYTN  420
QDKTRSKGYN KFSKMAEGLD LNSNGDTTVS SKERELDLNG FGWSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	64	117	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115025	0.0	BT115025.1 Picea glauca clone GQ03607_I01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8LAJ7	7e-69	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	C0PPV3	1e-105	C0PPV3_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	3e-71	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]