PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00043556-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 21176 Da PI: 5.2869 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 34.1 | 7.7e-11 | 8 | 38 | 1 | 31 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfa 31 +Ca+Ck++++kC+++Cvlapyfp ++p kf PSME_00043556-RA 8 RCAGCKIQKKKCSEKCVLAPYFPLNNPGKFM 38 6************************999885 PP | |||||||
2 | DUF260 | 52.8 | 1.2e-16 | 33 | 91 | 41 | 99 |
DUF260 41 nvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 n k++ +lp e+r da++s+vyeA r++dPv+G++gvi++lq+++++l+++la+ k+ PSME_00043556-RA 33 NPGKFMLNLPAEQRGDAVNSMVYEASQRIQDPVHGCAGVINDLQNKVAELQSQLASSKT 91 5668999***********************************************98876 PP | |||||||
3 | DUF260 | 42.7 | 1.6e-13 | 91 | 145 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++l++e+++da+s +vye+ r +dPv+G+vgvi++l++++e+++ +la++++e PSME_00043556-RA 91 TEELHTEHKDDAVSNMVYESSQRCKDPVHGCVGVINDLKNKVEEVELQLASTQAE 145 578999*******************************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.736 | 7 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-8 | 8 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-14 | 36 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-10 | 92 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSLERQTRCA GCKIQKKKCS EKCVLAPYFP LNNPGKFMLN LPAEQRGDAV NSMVYEASQR 60 IQDPVHGCAG VINDLQNKVA ELQSQLASSK TEELHTEHKD DAVSNMVYES SQRCKDPVHG 120 CVGVINDLKN KVEEVELQLA STQAELANMA MQHGNLLTII DRYHEGSIVK SHPPALDDVD 180 SMELWDPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-22 | 9 | 94 | 12 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-22 | 9 | 94 | 12 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 3e-46 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-35 | LOB domain-containing protein 1 |