PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043208-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GeBP
Protein Properties Length: 835aa    MW: 92676.8 Da    PI: 9.0591
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043208-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57364.82.1e-20159249597
            DUF573   5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                        +w+ +De+++L Gl+ f+  +g + +  +++ +y++v++ +++++s++q+ +K rrLK Kf+  v++  + ++ sf+++++   +++sk++W
  PSME_00043208-RA 159 HVWNIKDELAFLNGLLAFT--KGNNEFPkNMSPVYDYVRNTMDIHYSNKQFRDKFRRLKTKFQALVEN-MEVNNYSFKSPDEAALYKISKQLW 248
                       58****************5..55555544***************************************.889999****************** PP

            DUF573  97 g 97 
                       g
  PSME_00043208-RA 249 G 249
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.203.8E-125675No hitNo description
PfamPF045044.9E-20160249IPR007592Protein of unknown function DUF573
Gene3DG3DSA:3.30.200.203.8E-12356357No hitNo description
Gene3DG3DSA:3.10.350.102.2E-6491534IPR018392LysM domain
SuperFamilySSF541062.09E-5491534IPR018392LysM domain
Gene3DG3DSA:3.30.200.203.8E-12604664No hitNo description
PROSITE profilePS5001129.771611835IPR000719Protein kinase domain
PfamPF000691.1E-33616812IPR000719Protein kinase domain
SuperFamilySSF561123.28E-51616812IPR011009Protein kinase-like domain
SMARTSM002204.6E-9623834IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.105.1E-35665811No hitNo description
PROSITE patternPS001080735747IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MNSSDSTTEG SENSSSEQSE KMVHSHAKTL NPSPRTSDSE SEDDSDSSTP PLKKHHQQEQ  60
KKEQQPQKQK DQLPPPSPSP SALISNKTAA TKTSVKRPRE VENVATPELP PTKKKATART  120
VQHSDKVPAK ETKKAHKQKG TESVSTPSSP QNSGKKGLHV WNIKDELAFL NGLLAFTKGN  180
NEFPKNMSPV YDYVRNTMDI HYSNKQFRDK FRRLKTKFQA LVENMEVNNY SFKSPDEAAL  240
YKISKQLWGV EDEGDDEHTH NAETVSKASM DGKEKKKKKQ PVQAEEEEGE KIKNGDQGEE  300
EEGGDEPKRD KTMTNALVNS NAGDVDRIRE ERDHMVNEMK NSVANILNES EAKKKAMLEG  360
YFLNTRADHV QYPYIDSMTG IYSGRQAPVL NKVKAKALEE KWRKQQIVEM KAYLGRLDLL  420
QEECEMYLEG LREPVGRDSR KFENLTTYQA VETANPTLVV TDLQIGSLAT IPIRCNCPLE  480
AQGTNGTKML ITYVVHPGDT PSNISQTSGA DLQNLISLNG INSTLTFYRT LLVPDSQKPV  540
LTQPAPSPLS PPPPTVVNNT NSRGESNDGV VIGALVGGAT AVACIALFIF YLLIKKGWLN  600
KQTSISNDQR SPSAVKIGNT KKGSVYEGTL DGRDYAIKLM KGDISKELKI LQKVNHTNLV  660
KLEEVCVSSK GQSYLVYEYI KNSSLNTWLH DPESIQNMTT IGWSSTSLTW KTRLQVGLDV  720
ANGLQYIHEH TTPSVVHKDI KSSNILLDGK FRAKIANFGM SKSGINALTK HIMGTQRYMA  780
REYLADGFVS PKLDVFAFGV VLLEMISGKE AIVREKGVPL AGKASLLWTQ IKPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A3e-3061681222217Concanavalin A-like lectin protein kinase family protein
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6780120.0EF678012.1 Picea sitchensis clone WS02817_M06 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-11DNA-binding storekeeper protein-related transcriptional regulator