PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043163-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 310aa    MW: 34968.2 Da    PI: 8.0678
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043163-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC135.21.9e-421602539102
             NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                       + e++++fknh+ Pl+rik+i+kadedv+misa+ P+ll+kace+filel l sw+haeenk rtl+k+di aa+trtdif+flv i+prdel
  PSME_00043163-RA 160 RSEQVNEFKNHQQPLTRIKQIMKADEDVRMISAKDPILLAKACEMFILELILCSWNHAEENKWRTLQKNDIVAAITRTDIFNFLVHIMPRDEL 252
                       5799***************************************************************************************87 PP

             NF-YC 102 k 102
                       k
  PSME_00043163-RA 253 K 253
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.31E-22152243IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-28163235IPR009072Histone-fold
PfamPF008086.0E-13173234IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEREDNWKSR VEVVKDGLEM LRVAMERNIV AFFENTYNQT LVAVQLMKHR AHEPRVDGKK  60
SLIIFLAPEI RFVREQAEVI AIHADLRVAH TSGSKSADGW KAEATLNELL ALCLWACRGR  120
WDSSHRRIQV STRVAGSRPS TTITCSSCST TCSELSKCKR SEQVNEFKNH QQPLTRIKQI  180
MKADEDVRMI SAKDPILLAK ACEMFILELI LCSWNHAEEN KWRTLQKNDI VAAITRTDIF  240
NFLVHIMPRD ELKEGGIPPE GLFYYPSPSM PPIATLTGND CLPFCHDGKT CSNSSRPIGH  300
VYVAAAGTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-42155249195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-47nuclear factor Y, subunit C1