PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043158-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 394aa MW: 44921 Da PI: 6.6415

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043158-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.5e-31	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++F++av++LGG++kAtPk il+lm+++gLtl+hvkSHLQ YR+ PSME_00043158-RA 20 PRLRWTPHLHNCFINAVKHLGGQDKATPKLILQLMGINGLTLSHVKSHLQVYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-28	16	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.435	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	1.13E-14	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-24	20	73	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-8	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MRKSARSSGF LRQYVRSRVP RLRWTPHLHN CFINAVKHLG GQDKATPKLI LQLMGINGLT 60 LSHVKSHLQV YRSVKNDENT SRKSEPKLFE TILDMEHSQN AQNILGKDSE IGSFHSILNQ 120 SLIANGYSSA RSSSCTEDAN NSDEQWPEAT SARLRPRPAD GLHEVSYMEG NASPNVFLGS 180 TNSMGIEPYF MQRIDDIVSL NHTLQCWTEG RLAPSCHTVK YSDKEDQLDH HDGLVSRLFA 240 DSCDSDLSQA RFGQDSRTFL PNLQDGWNDE LTMGLVQRFN TDHSDEHHLK QAIDLRNERR 300 HEHHLKQAID LRNERRPREL QLIESFCQES RTVDEANIII PPEKIKTVGA INGEEYNRSS 360 TYEHSKFSNE MVSFRPEPDR NDIKLELTMS VSAG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MRKSARSSGF LRQYVRSRVP RLRWTPHLHN CFINAVKHLG GQDKATPKLI LQLMGINGLT  60
LSHVKSHLQV YRSVKNDENT SRKSEPKLFE TILDMEHSQN AQNILGKDSE IGSFHSILNQ  120
SLIANGYSSA RSSSCTEDAN NSDEQWPEAT SARLRPRPAD GLHEVSYMEG NASPNVFLGS  180
TNSMGIEPYF MQRIDDIVSL NHTLQCWTEG RLAPSCHTVK YSDKEDQLDH HDGLVSRLFA  240
DSCDSDLSQA RFGQDSRTFL PNLQDGWNDE LTMGLVQRFN TDHSDEHHLK QAIDLRNERR  300
HEHHLKQAID LRNERRPREL QLIESFCQES RTVDEANIII PPEKIKTVGA INGEEYNRSS  360
TYEHSKFSNE MVSFRPEPDR NDIKLELTMS VSAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-27	G2-like family protein