PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043156-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 929aa    MW: 100347 Da    PI: 5.1599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043156-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-102271148
                      TSSS-HHHHHHHHHHHHH...TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkq...lGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l d+ ++   lG  +W+ +a+ + + R++k+c++rw +yl
  PSME_00043156-RA 22 KGLWSPEEDQKLNDYMTKnclLGC-SWSYVAKQLDLQRCGKSCRLRWINYL 71
                      678**************9443454.6***********************97 PP
2Myb_DNA-binding42.12e-1381119545
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +E++l++++ + lG++ W+ Ia++++ gRt++++k++w+
  PSME_00043156-RA  81 SSQEEQLIIQLQAILGNR-WSQIAAHLP-GRTDNEIKNYWN 119
                       689***************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1761771IPR017930Myb domain
SuperFamilySSF466895.19E-2319118IPR009057Homeodomain-like
SMARTSM007170.00422173IPR001005SANT/Myb domain
PfamPF002491.1E-72271IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-192378IPR009057Homeodomain-like
CDDcd001672.80E-52571No hitNo description
PROSITE profilePS5129421.09772126IPR017930Myb domain
SMARTSM007172.1E-1376124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2279127IPR009057Homeodomain-like
PfamPF002491.3E-1181119IPR001005SANT/Myb domain
CDDcd001673.77E-1081119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MKCKLQGQER GVSFSSQPKI RKGLWSPEED QKLNDYMTKN CLLGCSWSYV AKQLDLQRCG  60
KSCRLRWINY LRPGLKHGGI SSQEEQLIIQ LQAILGNRWS QIAAHLPGRT DNEIKNYWNC  120
SIKKKLKLKH RLPSSTQANG SNSREPDFPS QSNHTCNTYS ESAVLSAKQL DVMPEGYLQL  180
DGMPEGYLQS VNDVFNVMAN GENQHSCVQD LLDLKYKEVQ HKVFPTYPNP INNQLISYSQ  240
LWIASSHIDQ SSSQGFTSPS LQAQDHTYNG AKSSRCDQLI DLSTLPRNEA PGSANNALGY  300
TTTITALDMG DSLKSKIESP DQIMINENET IDYSPFASSS GSINAWSASH SHSNASDFTD  360
VYPGAYTTAK EVEDYVSQFH YRKTAHQPCQ PLNIDQWFNI DCKDYVNLTY GEFSLGVPTY  420
NSFQLSHQMG GMQVGDHGVC STIANEELPH QMGGMFGVYW RGGMEEEEVD YTSDGDNEKE  480
ILVVGDLSGA LDSRGTSGPL LPGEGPGVIS GQVDVVGLER SESARLSSEG LEAVLFKTSE  540
GLGLEQQDLA GLLGRTLSPQ AGYFTNFPAL SSEFPVEGFS PVFGGCFQQQ SLVGDIGSFS  600
VGALVGSEAG QGLDSAQGYG DGEIPRVAVS SSGPAVAVLG GHEPEAESFL ANKQGRIASK  660
GLSKGPKAVK NRKRRDKLVL GIDVSMEEAE DMSMIAVVGH VREGRTVANE PVINISSRKL  720
PFSSDGILCE VDNAKKDTGG LIADRQGAGE HALVSSGTRP ISEQATFRGV ASSNPLGMSF  780
SPSTVVSSFT VSADLGGVLS AGSPLASPVI HYPVVSCPML STDYAFSPSI VSTNSSSISE  840
GKSIRYALRS REISYEGSGG KGLPDLSMSV MGKGRGWYCA DSLLESLPFT GELVPTKIKN  900
NWEGYRFLAD CTVFGGLLPP LHGICVIFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26181263108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671676RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.36e-39myb domain protein 55