PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043152-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family S1Fa-like
Protein Properties Length: 100aa    MW: 11356.5 Da    PI: 10.6743
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043152-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA109.31.9e-342585565
              S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGv 65
                      k+  +G+nP livllvv g+ll f+vgny+ly+yaqk+lPP+kkkPvskkk+k+eklkqG+
  PSME_00043152-RA 25 KAAGRGFNPRLIVLLVVVGVLLAFIVGNYVLYMYAQKTLPPKKKKPVSKKKMKKEKLKQGI 85
                      45569*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.9E-322785IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEEDFFSQAD VDPSTFVGHE RLHTKAAGRG FNPRLIVLLV VVGVLLAFIV GNYVLYMYAQ  60
KTLPPKKKKP VSKKKMKKEK LKQGIFPQRI ITLNAEAVER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1183046e-91BT118304.1 Picea glauca clone GQ04004_N22 mRNA sequence.
GenBankEF0845676e-91EF084567.1 Picea sitchensis clone WS02720_J04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-22DNA-binding protein S1FA
RefseqXP_024026346.11e-22DNA-binding protein S1FA
TrEMBLW9SCA32e-20W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.13e-21(Morus notabilis)