PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00043149-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20019.7 Da PI: 6.2323 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.9 | 1e-35 | 33 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vhk++G+++v+kll++ r da+s++vyeA r+rdPv+G+vgvi++lq+++++l++ PSME_00043149-RA 33 PCAGCKIQRKKCSQNCVLAPYFPQDNPQKFVLVHKVYGNRHVIKLLEK-----RGDAVSCMVYEASQRLRDPVHGCVGVINDLQKKVAELQSR 120 7*********************************************98.....**************************************** PP DUF260 94 lallkee 100 la++++e PSME_00043149-RA 121 LASTQTE 127 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.665 | 32 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-34 | 33 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
ASLVFEKKPP AHSDGTMANM SSDSKPEMWS TSPCAGCKIQ RKKCSQNCVL APYFPQDNPQ 60 KFVLVHKVYG NRHVIKLLEK RGDAVSCMVY EASQRLRDPV HGCVGVINDL QKKVAELQSR 120 LASTQTELAN ISMQHANLYT LITEGPADLH LYDGSALESE DSNVSEDGTD PMELWEPLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 30 | 128 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 30 | 128 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF678142 | 5e-90 | EF678142.1 Picea sitchensis clone WS02823_H17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 6e-45 | LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 3e-83 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | AES67410 | 2e-44 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-46 | LOB domain-containing protein 1 |