PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043148-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 176aa    MW: 19764.4 Da    PI: 4.5725
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043148-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601301e-40231231101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCa+Ck++r+kC+++Cvlapyfp+++p+kf  vh++FG+ +v+kll++lp e+r +a+ss+vyeA  r +dPv+G+vgvi++lq+++++l+ +
  PSME_00043148-RA  23 ACAGCKIQRKKCSQNCVLAPYFPQDNPQKFLLVHRVFGNGHVIKLLQDLPAEQRAEAVSSMVYEASQRFKDPVNGCVGVISDLQKKIAELQFQ 115
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la+++++l
  PSME_00043148-RA 116 LASTQTQL 123
                       **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08622123IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3923120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
IDFVLQMSDI SAKSKPETWS TAACAGCKIQ RKKCSQNCVL APYFPQDNPQ KFLLVHRVFG  60
NGHVIKLLQD LPAEQRAEAV SSMVYEASQR FKDPVNGCVG VISDLQKKIA ELQFQLASTQ  120
TQLSAISMQH DNLLGLLNEG SAPNFYNEPL LEFENSTHVF EEDDVDSMEL WDPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-35201238111LOB family transfactor Ramosa2.1
5ly0_B3e-35201238111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597159.14e-49LOB domain-containing protein 1
TrEMBLB8LQI97e-91B8LQI9_PICSI; Uncharacterized protein
STRINGAES674102e-48(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-49LOB domain-containing protein 1