PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043111-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 89aa    MW: 10528 Da    PI: 5.8714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043111-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.29e-2526757129
               NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ewyfFs+rd+ky++g+r+nrat++gy katg+d++++s  g+++g+kktLvfy      ge +dWvmheyrle
  PSME_00043111-RA   2 EWYFFSPRDRKYPNGSRTNRATEAGYCKATGRDRKIYS-LGSTIGIKKTLVFY------GELSDWVMHEYRLE 67 
                       8*************************************.8999**********......7889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.196189IPR003441NAC domain
SuperFamilySSF1019415.23E-26275IPR003441NAC domain
PfamPF023658.5E-14366IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MEWYFFSPRD RKYPNGSRTN RATEAGYCKA TGRDRKIYSL GSTIGIKKTL VFYGELSDWV  60
MHEYRLEENE CEEGPLFAVL FILWDVVFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-2526670140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0848191e-70EF084819.1 Picea sitchensis clone WS02811_I19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316554.12e-32NAC domain-containing protein 71 isoform X2
RefseqXP_012835579.13e-32PREDICTED: NAC domain-containing protein 86
RefseqXP_015065777.12e-32NAC domain-containing protein 71-like isoform X2
SwissprotQ9FFI51e-28NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA9NU173e-41A9NU17_PICSI; Uncharacterized protein
TrEMBLB8LLW82e-40B8LLW8_PICSI; Uncharacterized protein
STRINGPGSC0003DMT4000183643e-32(Solanum tuberosum)
STRINGMigut.K00745.1.p1e-31(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-32NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]