PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043038-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 364aa    MW: 40959.1 Da    PI: 6.5065
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043038-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260903e-2835136197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C l+p++      ++q++++ +++k++G+s +++l+++ p+  r+++++sl+yeA+ r+ +P yG+vg++++++++++
  PSME_00043038-RA  35 SCNGCRVLRKGCSDSCQLRPCLqwirsSESQANATVFLAKFYGRSGLMNLINSGPDYLRPTLFRSLLYEACGRIVNPTYGSVGLLWSGNWHIC 127
                       6*********************9999778899************************************************************* PP

            DUF260  89 qlkaelall 97 
                       q+++e +l 
  PSME_00043038-RA 128 QAAVENVLK 136
                       ***998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.38834140IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-2335132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFFPKKCMTS DMDSAFVVCS FDRNSSWEEY TMRMSCNGCR VLRKGCSDSC QLRPCLQWIR  60
SSESQANATV FLAKFYGRSG LMNLINSGPD YLRPTLFRSL LYEACGRIVN PTYGSVGLLW  120
SGNWHICQAA VENVLKGYPL QPLNLLEIDS PLPPPPPVAA AVAPQSMETV ADCKLHNVKS  180
RGRFKRPLYR KPSTEIKQLN LQTLSNEDVE GILGGSQVYN LRWRRCYPKE FQLNSGKPAT  240
NFLSTDSSSD SDDLARLKSG FQNVKSNNYN NPIENRAETR AQFEEIEEDQ GEDPLQNLLQ  300
QNNNNEVENF MSAELTDEKN LALELTLGSP MAETTNAHSR QLSSSRMDRS PDLHVSSLRL  360
SLSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R1712e-92A0A0D6R171_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-68LOB domain-containing protein 40